Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq2966 89.7 2e-13 >seq2966 Length=51937 Score = 89.7 bits (98), Expect = 2e-13 Identities = 168/240 (70%), Gaps = 14/240 (6%) Strand=Plus/Minus Query 2693 TCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGG---CGA 2749 |||| ||||||||||||||||| | |||||| || || | || || | || | Sbjct 19170 TCAAGGTTAACCAAATCGGTACCCTCACTGAATCTATTCAAGC---CGCCAAGGACTCTC 19114 Query 2750 AAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAA 2809 ||| ||||| | | | || || |||||||| ||||||||||||||| | || | Sbjct 19113 AAGCTGCTGGTTGGGGTGTCATGGTTTCTCACCGTTCTGGTGAAACTGAAGATACTACCA 19054 Query 2810 TCGCTGATATTGCAGTTGCAACTAACG--CTGGTCAAATTAAGACAGGT--TCATTGTCA 2865 | || || | | |||| || || | |||||||||||||| ||| || ||| Sbjct 19053 TTGCCGACCTCGTTGTTGGT-CTC-CGTACCGGTCAAATTAAGACTGGTGCTCCTTG--C 18998 Query 2866 CGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAA 2925 ||| |||| ||| |||| || ||||||||| | || ||||| ||||| || | |||||| Sbjct 18997 CGTTCTGAACGTCTTGCCAAGTACAACCAACTTCTCCGTATTGAAGAAGAATTGGGTGAA 18938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156029939402904