Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_010356.1 Length=190032 Score E Sequences producing significant alignments: (Bits) Value seq5946 91.5 2e-13 seq809 91.5 2e-13 >seq5946 Length=44022 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115431 CATTAAAATTGGAATTTGAAAAAGTGTATATGCCCTATTTGTTAATTTGCAAGAAACGCT 115490 || |||| |||| ||||||||||| ||| | || || ||||| ||| ||||| |||| Sbjct 2314 CAATAAAGCTGGAGTTTGAAAAAGTTTATTTCCCATACTTGTTGATTAATAAGAAGCGCT 2373 Query 115491 ATATAGGTGCCCATTGGACAAAGCCAGAGATGTATGATAAAATCGATACAAAAGGTGTTG 115550 | ||| | ||||| ||| | |||| |||||||||| | ||||| || ||| ||| Sbjct 2374 ACGCTGGTCTATACTGGACTAAGGCGGAGAAGTATGATAAATTGGATACTAAGGGTATTG 2433 Query 115551 AAACGGCTAGAAGGGACAATTGC 115573 |||| | | |||||||||||| Sbjct 2434 AAACAGTGCGCAGGGACAATTGC 2456 >seq809 Length=27191 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 115431 CATTAAAATTGGAATTTGAAAAAGTGTATATGCCCTATTTGTTAATTTGCAAGAAACGCT 115490 || |||| |||| ||||||||||| ||| | || || ||||| ||| ||||| |||| Sbjct 4201 CAATAAAGCTGGAGTTTGAAAAAGTTTATTTCCCATACTTGTTGATTAATAAGAAGCGCT 4142 Query 115491 ATATAGGTGCCCATTGGACAAAGCCAGAGATGTATGATAAAATCGATACAAAAGGTGTTG 115550 | ||| | ||||| ||| | |||| |||||||||| | ||||| || ||| ||| Sbjct 4141 ACGCTGGTCTATACTGGACTAAGGCGGAGAAGTATGATAAATTGGATACTAAGGGTATTG 4082 Query 115551 AAACGGCTAGAAGGGACAATTGC 115573 |||| | | |||||||||||| Sbjct 4081 AAACAGTGCGCAGGGACAATTGC 4059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607927760763840