Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq23 179 3e-40 seq2855 154 1e-32 >seq23 Length=21893 Score = 179 bits (198), Expect = 3e-40 Identities = 434/651 (67%), Gaps = 11/651 (2%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||||| || || |||||||| ||||| | ||||| | ||| ||||| || Sbjct 4454 GGGAGGGCAATGGAGGCTAGGTTGCATACAGCAACTTCGTCCTTGGAGGTGTACTCAACG 4513 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGT---ATGGTGCCCAAATTCTGTTGATTACTCTTG 66118 ||||| ||||| || || || ||| | || || || | || ||||| ||| || Sbjct 4514 ATTTCAGTGCATAGGTT--TG-AGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTA 4570 Query 66119 CGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATG 66178 | || || || || ||||| | |||||| ||||| || || || | ||||| || | | Sbjct 4571 CCGTTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAG 4630 Query 66179 ATGGCGTGCCAAAGAGCGCGTGCCTTCAC-CGTACGTACCGCCCTACCTT---TGCGTTC 66234 || |||| ||| || | || | | ||| | | ||||| || ||| Sbjct 4631 ATAGCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAG-ACCTTCAGTGTTTTC 4689 Query 66235 GTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTT 66294 ||| | | |||||| | ||||| ||||||||| || || | |||| ||| | Sbjct 4690 GTACTTTAGGTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTTC 4749 Query 66295 GTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGG 66354 || || || | | ||||| || || | | || || ||||| || || ||||| Sbjct 4750 ATGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGG 4809 Query 66355 TATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCG 66414 ||||| ||| ||||||| | || || || || | || || | ||||||||||| | Sbjct 4810 AATCCAAAGGCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTCT 4869 Query 66415 CAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 ||||| | || ||||| ||||| | |||||||||||| || || |||||||| | ||| Sbjct 4870 CAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGCC 4929 Query 66475 CATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACAT 66534 ||||||| ||| ||||| |||||||| |||||| ||||||| || | | ||| Sbjct 4930 TGGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCAT 4989 Query 66535 CGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTAT 66594 || |||| ||||| || | || || || || | ||| ||| || ||| || || Sbjct 4990 TGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCGGAT 5049 Query 66595 ATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || ||| | | || || || ||||| || | || || || |||||| Sbjct 5050 ATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACA 5100 Score = 96.9 bits (106), Expect = 3e-15 Identities = 342/531 (64%), Gaps = 10/531 (2%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 |||| ||||| | ||| |||| ||||| | |||||| || || ||||||||||| ||| Sbjct 3422 TCGATAGTGAATTTGATAGCATCGGCAGCAGGCTTGGTTCTGAGGTAGTACATGCCTGTC 3481 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || | || ||| |||| || |||||||| | | |||| ||||| || | | Sbjct 3482 TTCAATCCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGTTTTTGGTAATTTGGGTTG 3541 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 ||| || ||||| | || || || |||||||||||| || || ||||||| | Sbjct 3542 TCCATGTGAATATTGAGGGATTGGCTTTGATCGATGTAAGCTCCGCGGTCTGCAGAAAGA 3601 Query 65258 TCAATGATACGAC-GTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 || |||||| ||| | | || || | || || ||||| || | | ||| Sbjct 3602 TCTATGATA-GACTTTTGCTTAATTTCATAAACAGTTTTGTAGAGTTGTTTCAAGTCATC 3660 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 ||| || | || | |||| || ||| | || || || | | ||| | Sbjct 3661 TGGGATTTGGGGAAGTGCTTGGATAGATCCATTGTGAGCGATTATTTGTTGACGGGTGTC 3720 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTG----AACCAAGTGACGATTGATGACTT 65432 || ||||||||||| | | | || | ||||||| | || | || | Sbjct 3721 ATCAGACCACAAACCGCGTTTTACTAAATCACGCAATAACCAAG----GGTTAACTACCT 3776 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||| || || | || || ||||| || ||||| || ||| || |||||| ||| Sbjct 3777 GGAATTCTCCAGCAAGAACGCGACGAGTGTAAATGTTTGAGGTGTACGGCTCAAAGCATT 3836 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | || ||| | |||||||| || || || || ||||||||||||| || | |||| Sbjct 3837 CGTTGAAGCCCAAAATTTGGGATGTGGAGGCTGTAGGCATGGGAGCGAGCAGGAGGGAGT 3896 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA 65603 ||| | |||| ||| ||||| | ||| | | |||||||| ||||| Sbjct 3897 TTCTGACGCCGTATTTTTTGATGTTTTCACGGAGTGTGTCCCAGTCCCACA 3947 >seq2855 Length=12074 Score = 154 bits (170), Expect = 1e-32 Identities = 562/866 (65%), Gaps = 34/866 (4%) Strand=Plus/Minus Query 61084 GATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT 61143 || || |||| ||||||||||| || ||||| |||||||| || || || |||||| Sbjct 5771 GAAATATGGCAAATGTACAAAAAAGCTGAAGCCAGTTTCTGGACTGTTGAAGAAGTCGAT 5712 Query 61144 TTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACA----TTTCAT 61199 |||| | |||| | ||||||| | | | | | ||| | | |||||| Sbjct 5711 CTGTCTCATGACACTCAACACTGGGAAAACA-AGCTAACTGATAACGAAAGGTATTTCAT 5653 Query 61200 TAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT-TTATTGG 61258 ||| | | | || ||||| || ||| || ||||||||||| || || || | | Sbjct 5652 CAAAAACATCCTCGCCTTCTTCGCTGCTAGTGATGGTATCGTCAACGAAAACCTTGTCGC 5593 Query 61259 AACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTG 61318 | ||| | | | || | ||| | | || || || ||||| ||||| ||||| || Sbjct 5592 TAACTTTGGTACCGAAG-TCCAAATCCCAGAAGCCCGCTGTTTTTACGGTTTCCAAATAA 5534 Query 61319 CCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 || || ||| ||||| || |||||| | | || || || || ||||||| || Sbjct 5533 TGATTGAAAATATCCACAGCGAAATGTACTCTATGCTTATTGACACATACATCAAAGATA 5474 Query 61379 GGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAG 61438 | ||| | || || |||||||| | | | || || | ||| || | Sbjct 5473 ATGTTGAAAGAGACTTCTTACTCAATGCCGTACAAAACATCCCCTGCATAAAGAAAAAGG 5414 Query 61439 CGGATTGGGCCTTCAATTGGAT------CACCAGTACAACGGCTACATTTGGTGAACGAT 61492 | | |||||| | | ||||| | | || | || ||| |||||||| ||| Sbjct 5413 CTAACTGGGCCCTTGAATGGATTGATGACTCTAGAAAAA--GCT----TTGGTGAAAGAT 5360 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || || ||| || || || || |||| |||||||| || || ||||| ||||| | Sbjct 5359 TGGCTGCTTTTTGTGTCGTAGAAGGCATATTCTTCAGTGGCTCCTTCGCCGCCATCTTCT 5300 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | || || ||||| |||||||||||||| || ||| || || | || | | | Sbjct 5299 GGCTCAAAAAGCGTGGCCTTATGCCCGGTCTTACTTTCTCAAACGAACTTATCTGTAGAG 5240 Query 61613 ACGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATC 61669 | || || | || ||||| | ||| | ||| |||||| || || || || Sbjct 5239 ATGAAGGTCTTCACACCGATTTCGGCTGCCTATTG---TTCAAA---TACCTCGTCAACA 5186 Query 61670 GTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAAT 61729 || || || || | | |||||| ||| || || || || ||||| |||| Sbjct 5185 AACCTTCTGAAGAAACGATATTAGCCATTGTTGCTGACGCCGTTACCATAGAACAAGAAT 5126 Query 61730 TTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | | |||||| | || || ||||| || || || |||||| | |||||||| |||| Sbjct 5125 TCTTAACTGACTCATTACCTGTCTCTCTTATAGGAATGAATAGCAAGCTAATGTCCCAGT 5066 Query 61790 ATATTGAATTTGTTGCCGACCGTCTG--TTGGTCGATTTGGGTAT-GAAGCGGATCTATA 61846 | |||||||||||||| ||||| || || ||| || | | | || | || ||| Sbjct 5065 ACATTGAATTTGTTGCTGACCGCTTGCTTTTGTCTCTTGGCTTCTCCAAAC--AT-TATC 5009 Query 61847 ATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTT 61906 | | |||||||| ||||||||||| ||||| || || | |||||||| || || | Sbjct 5008 ACGTCACCAACCCATTCGATTTCATGGATATGATCTCTATGCAAGGCAAGACTAACTTCT 4949 Query 61907 TCGAGAAACGTGTAGGCGACTATCAA 61932 | || || || || ||||||| ||| Sbjct 4948 TTGAAAAGCGCGTCAGCGACTACCAA 4923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397538264025680