Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_010356.1 Length=190032 Score E Sequences producing significant alignments: (Bits) Value seq3076 98.7 1e-15 seq1625 98.7 1e-15 >seq3076 Length=20269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 115431 CATTAAAATTGGAATTTGAAAAAGTGTATATGCCCTATTTGTTAATTTGCAAGAAACGCT 115490 || ||||| |||| ||||||||||| ||| | || || ||||| || |||||| |||| Sbjct 11603 CAATAAAACTGGAGTTTGAAAAAGTATATTTCCCATACTTGTTGATCAACAAGAAGCGCT 11544 Query 115491 ATATAGGTGCCCAT--TGGACAAAGCCAGAGATGTATGATAAAATCGATACAAAAGGTGT 115548 | || || || ||||| ||| |||||| |||||||||| | ||||| || ||| | Sbjct 11543 ACGCTGG--CCTATACTGGACTAAGGCAGAGAAGTATGATAAATTGGATACTAAGGGTAT 11486 Query 115549 TGAAACGGCTAGAAGGGACAATTGC 115573 ||||||| | |||||||||||| Sbjct 11485 AGAAACGGTGCGCAGGGACAATTGC 11461 >seq1625 Length=32128 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 115431 CATTAAAATTGGAATTTGAAAAAGTGTATATGCCCTATTTGTTAATTTGCAAGAAACGCT 115490 || ||||| |||| ||||||||||| ||| | || || ||||| || |||||| |||| Sbjct 24811 CAATAAAACTGGAGTTTGAAAAAGTATATTTCCCATACTTGTTGATCAACAAGAAGCGCT 24870 Query 115491 ATATAGGTGCCCAT--TGGACAAAGCCAGAGATGTATGATAAAATCGATACAAAAGGTGT 115548 | || || || ||||| ||| |||||| |||||||||| | ||||| || ||| | Sbjct 24871 ACGCTGG--CCTATACTGGACTAAGGCAGAGAAGTATGATAAATTGGATACTAAGGGTAT 24928 Query 115549 TGAAACGGCTAGAAGGGACAATTGC 115573 ||||||| | |||||||||||| Sbjct 24929 AGAAACGGTGCGCAGGGACAATTGC 24953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607915510079680