Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2634 210 2e-49 seq5042 141 7e-29 >seq2634 Length=12318 Score = 210 bits (232), Expect = 2e-49 Identities = 486/726 (67%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||| |||| ||| || | |||||| ||||| | ||||| | ||| || || || Sbjct 8631 GGAAGAGCAATAGAGGCTAAGTTGCAAACAGCAACTTCGTCCTTGGAGGTGTATTCAACG 8572 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGT---ATGGTGCCCAAATTCTGTTGATTACTCTTG 66118 ||||| ||||| || || || ||| | || || || | || ||||| ||| ||| Sbjct 8571 ATTTCAGTGCAAAGGTT--TG-AGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTG 8515 Query 66119 CGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATG 66178 | || || || || ||||| | |||||| ||||| || || || | |||||| || | Sbjct 8514 CCGTTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAA 8455 Query 66179 ATGGCGTGCCAAAGAGCGCGTGCCTTCAC-CGTACGTACCGCCCTACCTT---TGCGTTC 66234 || |||| ||| || | || | | ||| | | ||||| || ||| Sbjct 8454 ATAGCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAG-ACCTTCAGTGTTTTC 8396 Query 66235 GTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTT 66294 ||| | | |||||| | ||||| || ||||| || || | |||| || | Sbjct 8395 GTATTTTAGGTAGAGTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTC 8336 Query 66295 GTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGG 66354 || || || | | ||||| ||||| | | || || ||||| || || ||||| Sbjct 8335 ATGGGGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGG 8276 Query 66355 TATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCG 66414 ||||| || ||||||| | || || || || | || || | ||||||||||| | Sbjct 8275 AATCCAAAGACCGTAGAACAAGTCACGGGCACGATTTTCTTCTTTACCGTGATTTTTTCT 8216 Query 66415 CAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 | || | || ||||| |||||||||||||||||||| ||||| |||||||| | ||| Sbjct 8215 TAGGTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCC 8156 Query 66475 CATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACAT 66534 ||||||| ||| |||||||||||||| | |||| | ||||||| || | | ||| Sbjct 8155 TGGACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTGGAGCAT 8096 Query 66535 CGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTAT 66594 || || | ||||| || | |||||||| ||| ||||| || || ||| || || Sbjct 8095 TGGAACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAAT 8036 Query 66595 ATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCAC 66654 || ||| | | | |||||||| ||||| || | || ||||| ||| || | || | Sbjct 8035 ATTGTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCATTGGGAGAT 7976 Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714 || | || || || ||||||||| ||| || || || | | |||| ||||| || Sbjct 7975 AGTATCATAAATACCTTCGATGGAGTCATCCTGCATTGTTAGCAAGAAGCAGGAACTTAG 7916 Query 66715 TTGGGG 66720 || || Sbjct 7915 CTGAGG 7910 >seq5042 Length=7215 Score = 141 bits (156), Expect = 7e-29 Identities = 313/460 (68%), Gaps = 17/460 (4%) Strand=Plus/Minus Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 ||||| ||| || || || ||| || || || || | || |||||||| || ||| Sbjct 5836 TTTGGCGAAAGACTGGCTGCTTTTTGTGTCGTTGAAGGCATCTTCTTCAGTGGCTCTTTT 5777 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||||| ||||| ||| | || || ||||| || ||||||||||| || ||| ||| || Sbjct 5776 GCCGCCATCTTCTGGCTCAAAAAGCGTGGCCTCATGCCCGGTCTTACTTTCTCCAACGAA 5717 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGC 61656 | || | | ||||| || | || ||||||| ||| | ||| |||||| Sbjct 5716 CTTATCTGTAGAGACGAAGGTCTTCACACCGATTTTGGCTGCCTATTG---TTCAAA--- 5663 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 || || | || || || || || | | || ||| |||||| || || Sbjct 5662 TACCTCATCAACAAGCCCTCTGAAGAAAAAATATTAGCCATCGTTGCTGAGGCCGTTACC 5603 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 |||||||| ||||| | |||||| | | || ||||| || || || |||||| | | Sbjct 5602 ATCGAACAAGAATTCTTAACTGACTCACTACCTGTCTCCCTAATAGGAATGAATAGCAAA 5543 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT--GTTGGTCGATTTGGGTATGA 61834 ||||||| |||||||| ||||||||||| |||||| | || ||| | | ||| | Sbjct 5542 TTAATGTCCCAGTATATCGAATTTGTTGCTGACCGTTTACTTTTGTC--TCTAGGT-TTC 5486 Query 61835 AGCGGATCTATAATACG--AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGG 61892 ||| | | || ||| | |||||||| ||||||||||| ||||| || || | || Sbjct 5485 AGC-AAACATTATCACGTCACTAACCCATTCGATTTCATGGATATGATCTCTATGCAAGG 5427 Query 61893 CAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 ||| || ||||| || || || || || ||||||| ||| Sbjct 5426 CAAAACTAATTTCTTTGAAAAGCGCGTTAGCGACTACCAA 5387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397530453305360