Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3352 232 3e-58 >seq3352 Length=4304 Score = 232 bits (256), Expect = 3e-58 Identities = 249/321 (78%), Gaps = 19/321 (6%) Strand=Plus/Minus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||| ||||| || || || || ||||||||| |||||||||||||||||| |||| Sbjct 3118 GGATGTTGGCGAAAAGGCATCAATCGACCCGTCTTGAAACACGGACCAAGGAGTCCAACA 3059 Query 441 TCTATGCGAGTGTTTGGG--TGTCAAACCCGTGCGCGTAATGAAAGTGAACGG-----AG 493 | |||||||| | |||| | | |||||| || |||||||||||||||| || Sbjct 3058 TGCATGCGAGTATCTGGGAATTTTAAACCCATGTGCGTAATGAAAGTGAAAAATCATTAG 2999 Query 494 GTGGGAACC----CGT-GAG-GGTGCACCATCGACCGATCCT-GATGTCTTCGGATGGAT 546 | |||| | | ||| || ||| |||| ||||| | ||| | | || | Sbjct 2998 TATGTAACCTACTCTTCGAGTGGGGCAACATCAACCGACTTTAGATAGCGCTGCTTGAAA 2939 Query 547 ---TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 |||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 2938 AGGTTGAGTAAGAGCATGTATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 2879 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||| |||||||||||||| |||| ||||| || | ||||| |||||||||||||| || Sbjct 2878 TGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGAGATTCTGACGTGCAAATCGATC-TC 2820 Query 664 A-AATTTGGGTATAGGGGCGA 683 | ||||||||||||||||||| Sbjct 2819 AGAATTTGGGTATAGGGGCGA 2799 Score = 203 bits (224), Expect = 1e-49 Identities = 144/164 (88%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct 3590 GAGTCGGGTTGTTTGGGAATGCAGCCCTAATTGGGAGGTAAATTTCTTCCAAAGCTAAAT 3531 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||||| ||||||| |||| |||||||||||||||||||| || Sbjct 3530 ATCAGCAAGAGACCGATAGCATACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGAAA 3471 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||||| | ||||| |||||||||||||| ||||||| || ||| Sbjct 3470 AGAGAG-TGAAAAGTACGTGAAATTGTTGGAAGGGAACCGGTTG 3428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079832754350