Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3352 542 9e-152 >seq3352 Length=4304 Score = 542 bits (600), Expect = 9e-152 Identities = 373/419 (89%), Gaps = 17/419 (4%) Strand=Plus/Plus Query 139 ACCTTAACGCCAGAAAA-TGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaa 197 ||||||| |||||| | | | |||||| | |||||| | | || | |||||||||| Sbjct 941 ACCTTAATTCCAGAAGGGTAGGCCGTGAAGCCTAGTTCCTCATTATAAAATAAGTAAAAA 1000 Query 198 aaCGATAAGGGTAGTGGTATTTCACTTGCG------------CCGAAACGGCTCCCACTT 245 ||| |||| ||||||||||||||||| || || ||| ||||||||| Sbjct 1001 AACAATAAAGGTAGTGGTATTTCACTGTCGGAACTAGTTAGACCAGAAC--CTCCCACTT 1058 Query 246 ATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 1059 ATTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCT 1117 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1118 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 1177 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1178 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 1237 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 1297 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1298 CTTCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1356 Score = 168 bits (186), Expect = 2e-39 Identities = 111/123 (90%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 751 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGCCCCCCTTAGGACACCTGCGTTATT 810 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| Sbjct 811 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTTTACCAGGATC 870 Query 127 GGC 129 || Sbjct 871 AGC 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635072503456