Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1007 551 2e-154 seq6019 408 1e-111 >seq1007 Length=8768 Score = 551 bits (610), Expect = 2e-154 Identities = 446/533 (84%), Gaps = 35/533 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAG-AGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| ||||| |||||| |||| ||||||| || ||||||||||||||||| Sbjct 7302 GTACTCATTACAATTCCAAGACTAAAAATTAGCCCTGGATTGTTATTTATTGTCACTACC 7243 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| || || |||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 7242 TCCCTGTATCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCGT 7183 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 7182 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGCCACCATGGT 7123 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCG----- 234 || || |||| |||||||||| |||||||||||||||||||||||||| || ||| Sbjct 7122 AGTCCTCTATACTACCATCGACAGTTGATAGGGCAGAAATTTGAATGATCCTTCGCCACA 7063 Query 235 CCGGCTCAAG---GC---CATGCGATTCGTTAAGTTATTATGAATCACCAA-------GG 281 || | ||| || ||||||| | | |||||||||||||| |||| | Sbjct 7062 CCCCCGAAAGAGTGCATAAATGCGATATGCTTAGTTATTATGAATCGCCAATTAAGAGGT 7003 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTT 339 ||||| | |||||||| |||||||||||| | | |||||| |||| || ||| Sbjct 7002 TGCCCC------CATTGGTTTTGTATCTAATAAATGCCCTCCTTCCCAAAAGTTGGAGTT 6949 Query 340 TTT---AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGT---AAGGTACTA 393 || |||||||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct 6948 GTTTACAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAGGTATCA 6889 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC-TGTATAG-ATTGCTT 451 ||||||||| ||| ||||| ||||||||||||||||||||||| ||||||| || | || Sbjct 6888 TCAAATAAATTATAGCTGATATAATGAGCCATTCGCAGTTTCACTTGTATAGAATAGTTT 6829 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6828 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 6776 >seq6019 Length=1247 Score = 408 bits (452), Expect = 1e-111 Identities = 356/440 (81%), Gaps = 33/440 (8%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAG-AGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| ||||| |||||| |||| ||||||| || ||||||||||||||||| Sbjct 1092 GTACTCATTACAATTCCAAGACTAAAAATTAGCCCTGGATTGTTATTTATTGTCACTACC 1033 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| || || |||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1032 TCCCTGTATCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCGT 973 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 972 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGCCACCATGGT 913 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCG----- 234 || || |||| |||||||||| |||||||||||||||||||||||||| || ||| Sbjct 912 AGTCCTCTATACTACCATCGACAGTTGATAGGGCAGAAATTTGAATGATCCTTCGCCACA 853 Query 235 CCGGCTCAAG------GCCATGCGATTCGTTAAGTTATTATGAATCACCAA-------GG 281 || | ||| ||||||| | | |||||||||||||| |||| | Sbjct 852 CCCCCGAAAGAGTGTATAAATGCGATATGCTTAGTTATTATGAATCGCCAATTAAGAGGT 793 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTT 339 ||||| | |||||||| |||||||||||| | | |||||| |||| || ||| Sbjct 792 TGCCCC------CATTGGTTTTGTATCTAATAAATGCCCTCCTTCCCAAAAGTTGGAGTT 739 Query 340 TTT---AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGT---AAGGTACTA 393 || |||||||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct 738 GTTTACAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAGGTATCA 679 Query 394 TCAAATAAACGATAACTGAT 413 ||||||||| ||| ||||| Sbjct 678 TCAAATAAATTATAGCTGAT 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510282234112