Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq33 248 1e-63 seq8 248 1e-63 seq12 241 2e-61 seq13 237 2e-60 seq42 235 8e-60 >seq33 Length=10039 Score = 248 bits (274), Expect = 1e-63 Identities = 198/232 (85%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | | || ||||| | |||||||||||||| | Sbjct 5162 GTACAAAGGGCAGGGACGTAATCAGCACAACCT-GATGAGTTATGCTTACTAGGAATT-C 5105 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||||| || ||| |||||||||| || ||||||| ||||| || ||||||| |||| Sbjct 5104 CTCGTTGATGAGCAATAATTGCAATGCTCAATCCCCAGCACGACCAAGTTTCAAAAGATT 5045 Query 120 ACCCGGACCTGTCGGCCAAGGTGA--TAGA-CTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||| ||||| |||||||||| | |||| ||||||| | |||||||||||||||| Sbjct 5044 GCCCAGACCTTTCGGCCAAGGAAAAATAGAACTCGTTGCCTTGGTCAGTGTAGCGCGCGT 4985 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4984 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 4933 >seq8 Length=107663 Score = 248 bits (274), Expect = 1e-63 Identities = 198/232 (85%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | | || ||||| | |||||||||||||| | Sbjct 107391 GTACAAAGGGCAGGGACGTAATCAGCACAACCT-GATGAGTTATGCTTACTAGGAATT-C 107448 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||||| || ||| |||||||||| || ||||||| ||||| || ||||||| |||| Sbjct 107449 CTCGTTGATGAGCAATAATTGCAATGCTCAATCCCCAGCACGACCAAGTTTCAAAAGATT 107508 Query 120 ACCCGGACCTGTCGGCCAAGGTGA--TAGA-CTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||| ||||| |||||||||| | |||| ||||||| | |||||||||||||||| Sbjct 107509 GCCCAGACCTTTCGGCCAAGGAAAAATAGAACTCGTTGCCTTGGTCAGTGTAGCGCGCGT 107568 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107569 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 107620 >seq12 Length=4600585 Score = 241 bits (266), Expect = 2e-61 Identities = 204/245 (83%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | | || ||| | ||| |||||||||||||| | Sbjct 189450 GTACAAAGGGCAGGGACGTAATCAGCACAACCT-GATAAGTCGTGCTTACTAGGAATT-C 189393 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||||| || |||| ||||||||| || ||||||| ||||| || ||||||| |||| Sbjct 189392 CTCGTTGATGAGCAACTATTGCAATGCTCAATCCCCAGCACGACCAAGTTTCAAAAGATT 189333 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG---ACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||| ||||| ||||||||||| | | |||||||| | |||||||||||||||| Sbjct 189332 TCCCAGACCTTTCGGCCAAGGTTAAAACAAACTCGTTGTCTTGGTCAGTGTAGCGCGCGT 189273 Query 177 GCGGCCCAGAA-CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCT 235 ||||||||||| |||| |||||||||||||||||||||||||||| ||||||| | | || Sbjct 189272 GCGGCCCAGAAACATCAAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCCTTTGGCT 189213 Query 236 AAAAG 240 |||| Sbjct 189212 TAAAG 189208 Score = 232 bits (256), Expect = 1e-58 Identities = 202/245 (82%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | ||| || ||| | ||| |||||||||||||| | Sbjct 35452 GTACAAAGGGCAGGGACGTAATCAGCACGACCT-GATAAGTCGTGCTTACTAGGAATT-C 35395 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||||| || |||| ||||||||| || || |||| ||||| || ||||||| |||| Sbjct 35394 CTCGTTGATGAGCAACTATTGCAATGCTCAATTCCCAGCACGACCAAGTTTCAAAAGATT 35335 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG---ACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||| ||||| ||||||| || | | |||||||| | |||||||||||||||| Sbjct 35334 TCCCAGACCTTTCGGCCAGGGCTAAAACAAACTCGTTGTCTTGGTCAGTGTAGCGCGCGT 35275 Query 177 GCGGCCCAGAA-CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCT 235 ||||||||||| |||| |||||||||||||||||||||||||||| ||||||| | | || Sbjct 35274 GCGGCCCAGAAACATCAAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCCTTTGGCT 35215 Query 236 AAAAG 240 |||| Sbjct 35214 TAAAG 35210 >seq13 Length=37301 Score = 237 bits (262), Expect = 2e-60 Identities = 203/245 (83%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| | | | || ||| | ||| |||||||||||||| | Sbjct 2760 GTACAAAGGGCAGGGACATAATCAGCACAACCT-GATAAGTCGTGCTTACTAGGAATT-C 2703 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||||| || |||| ||||||||| || ||||||| ||||| || ||||||| |||| Sbjct 2702 CTCGTTGATGAGCAACTATTGCAATGCTCAATCCCCAGCACGACCAAGTTTCAAAAGATT 2643 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG---ACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||| ||||| ||||||||||| | | |||||||| | |||||||||||||||| Sbjct 2642 TCCCAGACCTTTCGGCCAAGGTTAAAACAAACTCGTTGTCTTGGTCAGTGTAGCGCGCGT 2583 Query 177 GCGGCCCAGAA-CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCT 235 ||||||||||| |||| |||||||||||||||||||||||||||| ||||||| | | || Sbjct 2582 GCGGCCCAGAAACATCAAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCCTTTGGCT 2523 Query 236 AAAAG 240 |||| Sbjct 2522 TAAAG 2518 Score = 237 bits (262), Expect = 2e-60 Identities = 203/245 (83%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| | | | || ||| | ||| |||||||||||||| | Sbjct 14599 GTACAAAGGGCAGGGACATAATCAGCACAACCT-GATAAGTCGTGCTTACTAGGAATT-C 14656 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||||| || |||| ||||||||| || ||||||| ||||| || ||||||| |||| Sbjct 14657 CTCGTTGATGAGCAACTATTGCAATGCTCAATCCCCAGCACGACCAAGTTTCAAAAGATT 14716 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG---ACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||| ||||| ||||||||||| | | |||||||| | |||||||||||||||| Sbjct 14717 TCCCAGACCTTTCGGCCAAGGTTAAAACAAACTCGTTGTCTTGGTCAGTGTAGCGCGCGT 14776 Query 177 GCGGCCCAGAA-CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCT 235 ||||||||||| |||| |||||||||||||||||||||||||||| ||||||| | | || Sbjct 14777 GCGGCCCAGAAACATCAAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCCTTTGGCT 14836 Query 236 AAAAG 240 |||| Sbjct 14837 TAAAG 14841 >seq42 Length=2627 Score = 235 bits (260), Expect = 8e-60 Identities = 191/225 (85%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 8 GGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTG 67 ||||||||||||| ||| | | | || ||||| | |||||||||||||| |||||||| Sbjct 1 GGGCAGGGACGTAATCAGCACAACCT-GATGAGTTATGCTTACTAGGAATT-CCTCGTTG 58 Query 68 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATTACCCGGA 126 | || ||| |||||||||| || ||||||| ||||| || ||||||| |||| ||| || Sbjct 59 ATGAGCAATAATTGCAATGCTCAATCCCCAGCACGACCAAGTTTCAAAAGATTGCCCAGA 118 Query 127 CCTGTCGGCCAAGGTGA--TAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCC 183 ||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||| Sbjct 119 CCTTTCGGCCAAGGAAAAATAGAACTCGTTGCCTTGGTCAGTGTAGCGCGCGTGCGGCCC 178 Query 184 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999643035