Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq42 75.2 6e-12 seq33 75.2 6e-12 seq13 71.6 8e-11 >seq42 Length=2627 Score = 75.2 bits (82), Expect = 6e-12 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| || | |||||||||||||||| ||||||||||| Sbjct 597 CCAATCCCTAGTCGGCATCGTTTATGGCCAGGACTACGACGGTATCTAATCGTCTTCGA 655 >seq33 Length=10039 Score = 75.2 bits (82), Expect = 6e-12 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| || | |||||||||||||||| ||||||||||| Sbjct 4559 CCAATCCCTAGTCGGCATCGTTTATGGCCAGGACTACGACGGTATCTAATCGTCTTCGA 4501 >seq13 Length=37301 Score = 71.6 bits (78), Expect = 8e-11 Identities = 51/59 (86%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| |||||||| | |||||||||| ||||||| || |||||| Sbjct 2168 CCAATCCCTAGTCGGCATCGTTTACGGCCAGGACTACGACGTTATCTGAACGCCTTCGA 2110 Score = 71.6 bits (78), Expect = 8e-11 Identities = 51/59 (86%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| |||||||| | |||||||||| ||||||| || |||||| Sbjct 15191 CCAATCCCTAGTCGGCATCGTTTACGGCCAGGACTACGACGTTATCTGAACGCCTTCGA 15249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278399872110