Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq12 120 6e-25 seq42 113 8e-23 seq33 113 8e-23 seq13 111 3e-22 >seq12 Length=4600585 Score = 120 bits (132), Expect = 6e-25 Identities = 180/248 (73%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT--GCTCGAATACATTAGCATG 131 ||||| ||| |||| |||||||||||||||||| ||| || |||| |||||| Sbjct 34556 TTTACCATGAGCAAATCAGAGTGTTCAAAGCAGGCTTTTATGCCTGAATGTTAAAGCATG 34615 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||| || | | || | | | || || ||||||||||| || | |||||| Sbjct 34616 GAATAATAAAACACGCCGAGTGCGT-TAGTTA-TTGGTTTCTAGCGCCCGAG-AATGATG 34672 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || ||| | || ||||| | ||||| | |||||||||||||||||||| Sbjct 34673 AAGAGGAACGGTTGGGGGCTTTTGTATTTGGCCGCTAGAGGTGAAATTCTTGGATTGGCC 34732 Query 252 GAAGACTAACTACTGCGAAAGCGTT-CACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||||||||||||||| || ||| |||| |||| |||| |||| | |||||| Sbjct 34733 AAAGACAAACTACTGCGAAAGCTTTAGACCCAGGACGTTTCCATTGATCA-AGGACGAAA 34791 Query 311 GTTAGGGG 318 | ||||| Sbjct 34792 GCCAGGGG 34799 Score = 120 bits (132), Expect = 6e-25 Identities = 180/248 (73%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT--GCTCGAATACATTAGCATG 131 ||||| ||| |||| |||||||||||||||||| ||| || |||| |||||| Sbjct 188555 TTTACCATGAGCAAATCAGAGTGTTCAAAGCAGGCTTTTATGCCTGAATGTTAAAGCATG 188614 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||| || | | || | | | || || ||||||||||| || | |||||| Sbjct 188615 GAATAATACAACACGCCGAGTGCGT-TAGTTA-TTGGTTTCTAGCGCCCGAG-AATGATG 188671 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || ||| | || ||||| | ||||| | |||||||||||||||||||| Sbjct 188672 AAGAGGAACGGTTGGGGGCTTTTGTATTTGGCCGCTAGAGGTGAAATTCTTGGATTGGCC 188731 Query 252 GAAGACTAACTACTGCGAAAGCGTT-CACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||||||||||||||| || ||| |||| |||| |||| |||| | |||||| Sbjct 188732 AAAGACAAACTACTGCGAAAGCTTTAGACCCAGGACGTTTCCATTGATCA-AGGACGAAA 188790 Query 311 GTTAGGGG 318 | ||||| Sbjct 188791 GCCAGGGG 188798 >seq42 Length=2627 Score = 113 bits (124), Expect = 8e-23 Identities = 180/251 (72%), Gaps = 13/251 (5%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT--GCTCGAATACATTAGCATG 131 ||||| ||| |||| |||||||||||||||||| ||| || |||| |||||| Sbjct 900 TTTACCATGAGCAAATCAGAGTGTTCAAAGCAGGCTTTTATGCCTGAATGTTAAAGCATG 841 Query 132 GAATAATAGAATAGGACG--TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT-AATG 188 |||||||| || | | || |||| || || ||||||||| || ||| |||| Sbjct 840 GAATAATAAAACACGCCGAGTGCG----TAAGTTATTGGTTTCTT--ACGCCCGAGAATG 787 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 || || ||| | || ||||| | ||||| | |||||||||||||||||||| Sbjct 786 ATGAAGAGGAACGGTTGGGGGCTTTTGTATTTGGCCGCTAGAGGTGAAATTCTTGGATTG 727 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTT-CACCAAGGATGTTTTCATTAATCAGTGAACG 307 ||||| ||||||||||||||| || ||| |||| |||| |||| |||| | | Sbjct 726 GCCAAAGACAAACTACTGCGAAAGCATTAGACCCAGGACGTTTCCATTGATCA-AGGGCT 668 Query 308 AAAGTTAGGGG 318 ||||| ||||| Sbjct 667 AAAGTCAGGGG 657 >seq33 Length=10039 Score = 113 bits (124), Expect = 8e-23 Identities = 180/251 (72%), Gaps = 13/251 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT--GCTCGAATACATTAGCATG 131 ||||| ||| |||| |||||||||||||||||| ||| || |||| |||||| Sbjct 4256 TTTACCATGAGCAAATCAGAGTGTTCAAAGCAGGCTTTTATGCCTGAATGTTAAAGCATG 4315 Query 132 GAATAATAGAATAGGACG--TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT-AATG 188 |||||||| || | | || |||| || || ||||||||| || ||| |||| Sbjct 4316 GAATAATAAAACACGCCGAGTGCG----TAAGTTATTGGTTTCTT--ACGCCCGAGAATG 4369 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 || || ||| | || ||||| | ||||| | |||||||||||||||||||| Sbjct 4370 ATGAAGAGGAACGGTTGGGGGCTTTTGTATTTGGCCGCTAGAGGTGAAATTCTTGGATTG 4429 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTT-CACCAAGGATGTTTTCATTAATCAGTGAACG 307 ||||| ||||||||||||||| || ||| |||| |||| |||| |||| | | Sbjct 4430 GCCAAAGACAAACTACTGCGAAAGCATTAGACCCAGGACGTTTCCATTGATCA-AGGGCT 4488 Query 308 AAAGTTAGGGG 318 ||||| ||||| Sbjct 4489 AAAGTCAGGGG 4499 >seq13 Length=37301 Score = 111 bits (122), Expect = 3e-22 Identities = 179/249 (72%), Gaps = 9/249 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT--GCTCGAATACATTAGCATG 131 ||||| ||| |||| |||||||||||||||||| ||| || |||| |||||| Sbjct 1865 TTTACCATGAGCAAATCAGAGTGTTCAAAGCAGGCTTTTATGCCTGAATGTTAAAGCATG 1924 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT-AATGAT 190 |||||||| || | | || | | | || || |||| ||||| || ||| |||||| Sbjct 1925 GAATAATAAAACACGCCGAGTGCGT-TAGTTA-TTGGATTCTA--ACGTCCGAGAATGAT 1980 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 || ||| | || ||||| | ||||| | |||||||||||||||||||| Sbjct 1981 GAAGAGGAACGGTTGGGGGCTTTTGTATTTGGCCGCTAGAGGTGAAATTCTTGGATTGGC 2040 Query 251 TGAAGACTAACTACTGCGAAAGC-GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| ||||||||||||||| | ||| |||| |||| |||| |||| | ||||| Sbjct 2041 CAAAGACAAACTACTGCGAAAGCAATAGACCCAGGACGTTTCCATTGATCA-AGGACGAA 2099 Query 310 AGTTAGGGG 318 || ||||| Sbjct 2100 AGCCAGGGG 2108 Score = 111 bits (122), Expect = 3e-22 Identities = 179/249 (72%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT--GCTCGAATACATTAGCATG 131 ||||| ||| |||| |||||||||||||||||| ||| || |||| |||||| Sbjct 15494 TTTACCATGAGCAAATCAGAGTGTTCAAAGCAGGCTTTTATGCCTGAATGTTAAAGCATG 15435 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT-AATGAT 190 |||||||| || | | || | | | || || |||| ||||| || ||| |||||| Sbjct 15434 GAATAATAAAACACGCCGAGTGCGT-TAGTTA-TTGGATTCTA--ACGTCCGAGAATGAT 15379 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 || ||| | || ||||| | ||||| | |||||||||||||||||||| Sbjct 15378 GAAGAGGAACGGTTGGGGGCTTTTGTATTTGGCCGCTAGAGGTGAAATTCTTGGATTGGC 15319 Query 251 TGAAGACTAACTACTGCGAAAGC-GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| ||||||||||||||| | ||| |||| |||| |||| |||| | ||||| Sbjct 15318 CAAAGACAAACTACTGCGAAAGCAATAGACCCAGGACGTTTCCATTGATCA-AGGACGAA 15260 Query 310 AGTTAGGGG 318 || ||||| Sbjct 15259 AGCCAGGGG 15251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199551552