Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq33 176 2e-41 seq8 176 2e-41 seq12 163 1e-37 seq34 161 4e-37 seq13 161 4e-37 >seq33 Length=10039 Score = 176 bits (194), Expect = 2e-41 Identities = 231/317 (73%), Gaps = 15/317 (5%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||| || || | ||||| | || ||||||||||| |||||||||||||||||| | | Sbjct 6494 AGGTTGTTGTCTGAATGGCTTTATATGGCCCGTCTTGAAACACGGACCAAGGAGTCCACC 6553 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAA----CGGAGGT 495 | ||||||| |||||| | |||||| | ||| ||||||||||| | | | Sbjct 6554 TAATGTGCGAGTATTTGGGAGGTAAACCCATATGCGCAATGAAAGTGACTTATCCTATGA 6613 Query 496 GGGAACCCGTGAGGG----TGCACCATCGACCGATCCTGATGTCTT---CGGA--TGGAT 546 | | || | ||| |||| | | | | || || || | || || | Sbjct 6614 GAGGGTCCCTCGGGGCCTTTGCAATAGGGTCGGGCAGGGACGTTTTATACTGAACTGACT 6673 Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 || |||| ||| | | ||||||||||||||||||||||||||| || ||||||||| Sbjct 6674 CAGACTAAGCACATTG--GATGGGACCCGAAAGATGGTGAACTATGCTTGGATAGGGTGA 6731 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 ||||| |||||||| ||||||||||||| |||| ||||| ||||||||||||||||| || Sbjct 6732 AGCCAAAGGAAACTTTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAA 6791 Query 667 TTTGGGTATAGGGGCGA 683 | || | |||||||||| Sbjct 6792 TCTGAGCATAGGGGCGA 6808 Score = 168 bits (186), Expect = 3e-39 Identities = 135/160 (84%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||| |||||||||||||||||| ||||| |||||||||| || || |||||||| Sbjct 6154 GAGTCAGGTTGTTTGGGAATGCAGC-CTAAAGCTGGAGGTAAATCCCTCCTGAAGCTAAA 6212 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| |||||||||||||| ||||||| |||| ||||||||||||| ||| || | Sbjct 6213 TAATGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTCTGAA 6272 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 ||||||||||| || ||||||||||| | |||||||||| Sbjct 6273 GAGAGAGTTAAACAGTACGTGAAATTGCTTAAAGGGAAGC 6312 >seq8 Length=107663 Score = 176 bits (194), Expect = 2e-41 Identities = 231/317 (73%), Gaps = 15/317 (5%) Strand=Plus/Minus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||| || || | ||||| | || ||||||||||| |||||||||||||||||| | | Sbjct 106059 AGGTTGTTGTCTGAATGGCTTTATATGGCCCGTCTTGAAACACGGACCAAGGAGTCCACC 106000 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAA----CGGAGGT 495 | ||||||| |||||| | |||||| | ||| ||||||||||| | | | Sbjct 105999 TAATGTGCGAGTATTTGGGAGGTAAACCCATATGCGCAATGAAAGTGACTTATCCTATGA 105940 Query 496 GGGAACCCGTGAGGG----TGCACCATCGACCGATCCTGATGTCTT---CGGA--TGGAT 546 | | || | ||| |||| | | | | || || || | || || | Sbjct 105939 GAGGGTCCCTCGGGGCCTTTGCAATAGGGTCGGGCAGGGACGTTTTATACTGAACTGACT 105880 Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 || |||| ||| | | ||||||||||||||||||||||||||| || ||||||||| Sbjct 105879 CAGACTAAGCACATTG--GATGGGACCCGAAAGATGGTGAACTATGCTTGGATAGGGTGA 105822 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 ||||| |||||||| ||||||||||||| |||| ||||| ||||||||||||||||| || Sbjct 105821 AGCCAAAGGAAACTTTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAA 105762 Query 667 TTTGGGTATAGGGGCGA 683 | || | |||||||||| Sbjct 105761 TCTGAGCATAGGGGCGA 105745 Score = 168 bits (186), Expect = 3e-39 Identities = 135/160 (84%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG-GGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||| |||||||||||||||||| ||||| |||||||||| || || |||||||| Sbjct 106399 GAGTCAGGTTGTTTGGGAATGCAGC-CTAAAGCTGGAGGTAAATCCCTCCTGAAGCTAAA 106341 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| |||||||||||||| ||||||| |||| ||||||||||||| ||| || | Sbjct 106340 TAATGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTCTGAA 106281 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 ||||||||||| || ||||||||||| | |||||||||| Sbjct 106280 GAGAGAGTTAAACAGTACGTGAAATTGCTTAAAGGGAAGC 106241 >seq12 Length=4600585 Score = 163 bits (180), Expect = 1e-37 Identities = 133/159 (84%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| ||||||||||| |||||| ||||| |||||||||| || || ||||||||| Sbjct 36400 AGTCAGGTTGTTTGGGACTGCAGC-CTAAAGCTGGAGGTAAATCCCTCCTGAAGCTAAAT 36458 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||||||||||| ||||||| |||| ||||||||||||| ||| || | Sbjct 36459 AATGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTCTGAAG 36518 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 ||||||||||| || ||||||||||| | |||||||||| Sbjct 36519 AGAGAGTTAAACAGTACGTGAAATTGCTTAAAGGGAAGC 36557 Score = 158 bits (174), Expect = 5e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||| ||||||||||||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 190597 TGGGACCTGAAAGATGGTGAACTATGCTTGGATAGGGTGAAGCCAAAGGAGACTTTGGTG 190656 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| |||| ||||| ||||||||||||||||| ||| || |||||||||||| Sbjct 190657 GAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATCTGAGTATAGGGGCGA 190713 >seq34 Length=2752318 Score = 161 bits (178), Expect = 4e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| Sbjct 18806 TGGGACCCGAAAGATGGTGAACTATGCTTGGATAGGGTGAAGCCAAAGGAAACTTTGGTG 18747 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| |||| ||||| ||||||||||||||||| ||| || | |||||||||| Sbjct 18746 GAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATCTGAGCATAGGGGCGA 18690 >seq13 Length=37301 Score = 161 bits (178), Expect = 4e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||||||||||||||||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 4274 TGGGACCCGAAAGATGGTGAACTATGCTTGGATAGGGTGAAGCCAAAGGAGACTTTGGTG 4333 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| |||| ||||| ||||||||||||||||| ||| || |||||||||||| Sbjct 4334 GAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATCTGAGTATAGGGGCGA 4390 Score = 161 bits (178), Expect = 4e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||||||||||||||||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 13087 TGGGACCCGAAAGATGGTGAACTATGCTTGGATAGGGTGAAGCCAAAGGAGACTTTGGTG 13028 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| |||| ||||| ||||||||||||||||| ||| || |||||||||||| Sbjct 13027 GAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATCTGAGTATAGGGGCGA 12971 Score = 158 bits (174), Expect = 5e-36 Identities = 134/161 (83%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||| |||||||||||||||||| ||||| |||||||||| || || |||||||| Sbjct 3714 GAGTCAGGTTGTTTGGGAATGCAGC-CTAAAGCTGGAGGTAAATCCCTCCTGAAGCTAAA 3772 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG-AAAAGCACTTTGG 157 || |||| |||||||||||||| || |||| |||| |||||||| ||||| ||| || Sbjct 3773 TAATGGCGAGAGACCGATAGCGAACGAGTACCGTGAGGGAAAGATGAAAAAGAACTCTGA 3832 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 | ||||||||||| || ||||||||||| | |||||||||| Sbjct 3833 AGAGAGAGTTAAATAGTACGTGAAATTGCTTAAAGGGAAGC 3873 Score = 158 bits (174), Expect = 5e-36 Identities = 134/161 (83%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG-GGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||| |||||||||||||||||| ||||| |||||||||| || || |||||||| Sbjct 13647 GAGTCAGGTTGTTTGGGAATGCAGC-CTAAAGCTGGAGGTAAATCCCTCCTGAAGCTAAA 13589 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG-AAAAGCACTTTGG 157 || |||| |||||||||||||| || |||| |||| |||||||| ||||| ||| || Sbjct 13588 TAATGGCGAGAGACCGATAGCGAACGAGTACCGTGAGGGAAAGATGAAAAAGAACTCTGA 13529 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 | ||||||||||| || ||||||||||| | |||||||||| Sbjct 13528 AGAGAGAGTTAAATAGTACGTGAAATTGCTTAAAGGGAAGC 13488 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 406 GGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAA 465 ||||||||||| |||||||||||||||||| || | ||||||| |||||| | ||| Sbjct 4098 GGCCCGTCTTGAAACACGGACCAAGGAGTCCAATTGATGTGCGAGTATTTGGGAGGTAAA 4157 Query 466 CCCGTGCGCGTAATGAAAGT 485 ||| | ||| ||||||||| Sbjct 4158 CCCATATGCGCAATGAAAGT 4177 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 406 GGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAA 465 ||||||||||| |||||||||||||||||| || | ||||||| |||||| | ||| Sbjct 13263 GGCCCGTCTTGAAACACGGACCAAGGAGTCCAATTGATGTGCGAGTATTTGGGAGGTAAA 13204 Query 466 CCCGTGCGCGTAATGAAAGT 485 ||| | ||| ||||||||| Sbjct 13203 CCCATATGCGCAATGAAAGT 13184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998948950