Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq43 417 1e-114 seq36 417 1e-114 seq34 417 1e-114 seq33 417 1e-114 seq8 417 1e-114 seq13 343 3e-92 seq12 322 8e-86 seq1 96.9 6e-18 >seq43 Length=2303 Score = 417 bits (462), Expect = 1e-114 Identities = 252/266 (95%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 428 GTCTTCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 487 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 488 ATTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAAGAGCCG 547 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 ACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 607 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| Sbjct 608 CCTGTGGTAACTTTTCCGGCACCTCTAGCCTCAAATCCTGAGGTCCTAAAGGATCGATAG 667 Query 270 GCCACACTTTCATGGTTTGTATTCAC 295 ||||| |||||| |||| |||||||| Sbjct 668 GCCACCCTTTCAGGGTTCGTATTCAC 693 >seq36 Length=5949 Score = 417 bits (462), Expect = 1e-114 Identities = 252/266 (95%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 266 GTCTTCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 207 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 206 ATTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAAGAGCCG 147 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 146 ACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 87 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| Sbjct 86 CCTGTGGTAACTTTTCCGGCACCTCTAGCCTCAAATCCTGAGGTCCTAAAGGATCGATAG 27 Query 270 GCCACACTTTCATGGTTTGTATTCAC 295 ||||| |||||| |||| |||||||| Sbjct 26 GCCACCCTTTCAGGGTTCGTATTCAC 1 Score = 343 bits (380), Expect = 3e-92 Identities = 242/274 (88%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 24 GCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACG 83 || || ||| |||||||||||||||| |||||||||| ||||||||| |||||||||||| Sbjct 4650 GCTACAGTCTTCAGTAGGGTAAAACTGACCTGTCTCACGACGGTCTATACCCAGCTCACG 4709 Query 84 TTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143 |||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 4710 TTCCCTGTTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAA 4769 Query 144 GAGCCGACATCGAAGGATC-AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC 202 ||||||||||||||| ||| |||||||| | || |||| || | |||||||||||||| Sbjct 4770 GAGCCGACATCGAAGAATCAAAAAAGCAGCATCACTATATCCGTTCGGCTGCCACAAGCC 4829 Query 203 AGTT-ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 |||| |||||| ||||||||||| ||||||||||||||||||| |||| |||||| Sbjct 4830 AGTTGTTCCCTGCGGTAACTTTTCCGGCACCTCTAGCCTCAAATCCTGAGGACATAAAGG 4889 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||| |||||| |||| |||||||| Sbjct 4890 ATCGATAGGCCACCCTTTCAGGGTTCGTATTCAC 4923 >seq34 Length=2752318 Score = 417 bits (462), Expect = 1e-114 Identities = 252/266 (95%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 16633 GTCTTCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 16692 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 16693 ATTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAAGAGCCG 16752 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16753 ACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 16812 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| Sbjct 16813 CCTGTGGTAACTTTTCCGGCACCTCTAGCCTCAAATCCTGAGGTCCTAAAGGATCGATAG 16872 Query 270 GCCACACTTTCATGGTTTGTATTCAC 295 ||||| |||||| |||| |||||||| Sbjct 16873 GCCACCCTTTCAGGGTTCGTATTCAC 16898 >seq33 Length=10039 Score = 417 bits (462), Expect = 1e-114 Identities = 252/266 (95%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 8865 GTCTTCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 8806 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 8805 ATTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAAGAGCCG 8746 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8745 ACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 8686 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| Sbjct 8685 CCTGTGGTAACTTTTCCGGCACCTCTAGCCTCAAATCCTGAGGTCCTAAAGGATCGATAG 8626 Query 270 GCCACACTTTCATGGTTTGTATTCAC 295 ||||| |||||| |||| |||||||| Sbjct 8625 GCCACCCTTTCAGGGTTCGTATTCAC 8600 >seq8 Length=107663 Score = 417 bits (462), Expect = 1e-114 Identities = 252/266 (95%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 103688 GTCTTCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 103747 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 103748 ATTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAAGAGCCG 103807 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103808 ACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 103867 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| Sbjct 103868 CCTGTGGTAACTTTTCCGGCACCTCTAGCCTCAAATCCTGAGGTCCTAAAGGATCGATAG 103927 Query 270 GCCACACTTTCATGGTTTGTATTCAC 295 ||||| |||||| |||| |||||||| Sbjct 103928 GCCACCCTTTCAGGGTTCGTATTCAC 103953 >seq13 Length=37301 Score = 343 bits (380), Expect = 3e-92 Identities = 242/274 (88%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 24 GCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACG 83 || || ||| |||||||||||||||| |||||||||| ||||||||| |||||||||||| Sbjct 6470 GCTACAGTCTTCAGTAGGGTAAAACTGACCTGTCTCACGACGGTCTATACCCAGCTCACG 6411 Query 84 TTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143 |||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 6410 TTCCCTGTTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAA 6351 Query 144 GAGCCGACATCGAAGGATC-AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC 202 ||||||||||||||| ||| |||||||| | || |||| || | |||||||||||||| Sbjct 6350 GAGCCGACATCGAAGAATCAAAAAAGCAGCATCACTATATCCGTTCGGCTGCCACAAGCC 6291 Query 203 AGTT-ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 |||| |||||| ||||||||||| ||||||||||||||||||| |||| |||||| Sbjct 6290 AGTTGTTCCCTGCGGTAACTTTTCCGGCACCTCTAGCCTCAAATCCTGAGGACATAAAGG 6231 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||| |||||| |||| |||||||| Sbjct 6230 ATCGATAGGCCACCCTTTCAGGGTTCGTATTCAC 6197 Score = 343 bits (380), Expect = 3e-92 Identities = 242/274 (88%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 24 GCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACG 83 || || ||| |||||||||||||||| |||||||||| ||||||||| |||||||||||| Sbjct 10890 GCTACAGTCTTCAGTAGGGTAAAACTGACCTGTCTCACGACGGTCTATACCCAGCTCACG 10949 Query 84 TTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143 |||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 10950 TTCCCTGTTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAA 11009 Query 144 GAGCCGACATCGAAGGATC-AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC 202 ||||||||||||||| ||| |||||||| | || |||| || | |||||||||||||| Sbjct 11010 GAGCCGACATCGAAGAATCAAAAAAGCAGCATCACTATATCCGTTCGGCTGCCACAAGCC 11069 Query 203 AGTT-ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 |||| |||||| ||||||||||| ||||||||||||||||||| |||| |||||| Sbjct 11070 AGTTGTTCCCTGCGGTAACTTTTCCGGCACCTCTAGCCTCAAATCCTGAGGACATAAAGG 11129 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||| |||||| |||| |||||||| Sbjct 11130 ATCGATAGGCCACCCTTTCAGGGTTCGTATTCAC 11163 >seq12 Length=4600585 Score = 322 bits (356), Expect = 8e-86 Identities = 236/272 (87%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 24 GCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACG 83 || || ||| |||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 192749 GCTACAGTCTTCAGTAGGGTAAAACTGACCTCTCTCATGACGGTCTAAACCCAGCTCACG 192690 Query 84 TTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143 ||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||| Sbjct 192689 TTCCCCGTTAGTGGGTGAACAATCCAACGCTTACTGAATCGTGCTTCAGTATGATAGGAA 192630 Query 144 GAGCCGACATCGAAGGATC-AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC 202 |||||| |||||||| ||| |||||||| | || |||| || | |||||||||||||| Sbjct 192629 GAGCCGGCATCGAAGAATCAAAAAAGCAGCATCACTATATCCGTTCGGCTGCCACAAGCC 192570 Query 203 AGTT-ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 |||| |||||| |||||||||||||||||| ||||||||||| |||| |||||| Sbjct 192569 AGTTGTTCCCTGCCGTAACTTTTCTGGCACCTTTAGCCTCAAATCCTGAGGACATAAAGG 192510 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||| |||||| |||| |||||| Sbjct 192509 ATCGATAGGCCACCCTTTCAGGGTTCGTATTC 192478 Score = 289 bits (320), Expect = 5e-76 Identities = 229/274 (84%), Gaps = 12/274 (4%) Strand=Plus/Minus Query 24 GCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACG 83 || || ||| |||||||||||||||| |||||||||| |||||||||||||||||| ||| Sbjct 37719 GCTACAGTCTTCAGTAGGGTAAAACTGACCTGTCTCACGACGGTCTAAACCCAGCTTACG 37660 Query 84 TTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143 |||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 37659 TTCCCTGTTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAA 37600 Query 144 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 |||||||||||| ||||| | || |||| || | |||||||| |||||| Sbjct 37599 GAGCCGACATCG----------AAGCAGCATCACTATATCCGTTCGGCTGCCAGAAGCCA 37550 Query 204 GTT-ATCCCTGTGGTAAC-TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 || |||||| |||||| ||||||||||||| |||||||||| |||| |||||| Sbjct 37549 CTTGTTCCCTGCGGTAACTTTTTCTGGCACCTTTAGCCTCAAACCCTGAGGACATAAAGG 37490 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||| || |||||| |||| |||||||| Sbjct 37489 ATCGATAGGCTACCCTTTCAGGGTTCGTATTCAC 37456 >seq1 Length=4845341 Score = 96.9 bits (106), Expect = 6e-18 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 41781 TTAGTGGGTGAACAATCCAACGCTTACTGAATTCTGCTTCAGTATGATAGGAAGAGCC 41838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399581344