Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq33 291 2e-76 seq8 291 2e-76 seq42 280 3e-73 seq12 277 3e-72 seq13 273 4e-71 >seq33 Length=10039 Score = 291 bits (322), Expect = 2e-76 Identities = 207/237 (87%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 95 AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 154 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4925 AAGCCAAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 4984 Query 155 ACGCGCGCTACACTGACAGAGCCAACGAGTTCA---TCACCTTGGCCGGAAGGTCTGGGT 211 ||||||||||||||||| || |||||||||| | ||||||||| |||||||||| Sbjct 4985 ACGCGCGCTACACTGACCAAGGCAACGAGTTCTATTTTTCCTTGGCCGAAAGGTCTGGGC 5044 Query 212 AATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271 |||||| | ||||| |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 5045 AATCTTTTGAAACTTGGTCGTGCTGGGGATTGAGCATTGCAATTATTGCTCATCAACGAG 5104 Query 272 GAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||||||| ||||||| | | ||||||||||||||||||||||| Sbjct 5105 GAATTCCTAGTAAGCATAACTCATCAGGTTGTGCTGATTACGTCCCTGCCCTTTGTA 5161 >seq8 Length=107663 Score = 291 bits (322), Expect = 2e-76 Identities = 207/237 (87%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 95 AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 154 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107628 AAGCCAAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 107569 Query 155 ACGCGCGCTACACTGACAGAGCCAACGAGTTCA---TCACCTTGGCCGGAAGGTCTGGGT 211 ||||||||||||||||| || |||||||||| | ||||||||| |||||||||| Sbjct 107568 ACGCGCGCTACACTGACCAAGGCAACGAGTTCTATTTTTCCTTGGCCGAAAGGTCTGGGC 107509 Query 212 AATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271 |||||| | ||||| |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 107508 AATCTTTTGAAACTTGGTCGTGCTGGGGATTGAGCATTGCAATTATTGCTCATCAACGAG 107449 Query 272 GAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||||||| ||||||| | | ||||||||||||||||||||||| Sbjct 107448 GAATTCCTAGTAAGCATAACTCATCAGGTTGTGCTGATTACGTCCCTGCCCTTTGTA 107392 >seq42 Length=2627 Score = 280 bits (310), Expect = 3e-73 Identities = 201/231 (87%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 95 AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 154 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 AAGCCAAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 172 Query 155 ACGCGCGCTACACTGACAGAGCCAACGAGTTCA---TCACCTTGGCCGGAAGGTCTGGGT 211 ||||||||||||||||| || |||||||||| | ||||||||| |||||||||| Sbjct 171 ACGCGCGCTACACTGACCAAGGCAACGAGTTCTATTTTTCCTTGGCCGAAAGGTCTGGGC 112 Query 212 AATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271 |||||| | ||||| |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 111 AATCTTTTGAAACTTGGTCGTGCTGGGGATTGAGCATTGCAATTATTGCTCATCAACGAG 52 Query 272 GAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 |||| |||||||||| ||||||| | | ||||||||||||||||| Sbjct 51 GAATTCCTAGTAAGCATAACTCATCAGGTTGTGCTGATTACGTCCCTGCCC 1 >seq12 Length=4600585 Score = 277 bits (306), Expect = 3e-72 Identities = 214/251 (85%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 83 GACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA 141 |||||| |||| ||||| | ||||||| |||||||||||||||||||||||||||| || Sbjct 189199 GACTATTGGCTTTAAGCCAAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCCCTTTGA 189258 Query 142 TGTT-CTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC---ACCTTGGC 197 |||| |||||||||||||||||||||||||| || ||||||||| | |||||||| Sbjct 189259 TGTTTCTGGGCCGCACGCGCGCTACACTGACCAAGACAACGAGTTTGTTTTAACCTTGGC 189318 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || |||||||||| |||||| | ||||| |||||||||||||| |||||||||||| | Sbjct 189319 CGAAAGGTCTGGGAAATCTTTTGAAACTTGGTCGTGCTGGGGATTGAGCATTGCAATAGT 189378 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||| |||||||||||| |||||||||| || | ||||| | | |||||||||||| Sbjct 189379 TGCTCATCAACGAGGAATTCCTAGTAAGCACGACTTATCAGGTTGTGCTGATTACGTCCC 189438 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 189439 TGCCCTTTGTA 189449 Score = 268 bits (296), Expect = 2e-69 Identities = 212/251 (84%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 83 GACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA 141 |||||| |||| ||||| | ||||||| |||||||||||||||||||||||||||| || Sbjct 35201 GACTATTGGCTTTAAGCCAAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCCCTTTGA 35260 Query 142 TGTT-CTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA---CCTTGGC 197 |||| |||||||||||||||||||||||||| || ||||||||| | || |||| Sbjct 35261 TGTTTCTGGGCCGCACGCGCGCTACACTGACCAAGACAACGAGTTTGTTTTAGCCCTGGC 35320 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || |||||||||| |||||| | ||||| ||||||||||| || |||||||||||| | Sbjct 35321 CGAAAGGTCTGGGAAATCTTTTGAAACTTGGTCGTGCTGGGAATTGAGCATTGCAATAGT 35380 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||| |||||||||||| |||||||||| || | ||||| || | |||||||||||| Sbjct 35381 TGCTCATCAACGAGGAATTCCTAGTAAGCACGACTTATCAGGTCGTGCTGATTACGTCCC 35440 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 35441 TGCCCTTTGTA 35451 >seq13 Length=37301 Score = 273 bits (302), Expect = 4e-71 Identities = 213/251 (85%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 83 GACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA 141 |||||| |||| ||||| | ||||||| |||||||||||||||||||||||||||| || Sbjct 2509 GACTATTGGCTTTAAGCCAAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCCCTTTGA 2568 Query 142 TGTT-CTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC---ACCTTGGC 197 |||| |||||||||||||||||||||||||| || ||||||||| | |||||||| Sbjct 2569 TGTTTCTGGGCCGCACGCGCGCTACACTGACCAAGACAACGAGTTTGTTTTAACCTTGGC 2628 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || |||||||||| |||||| | ||||| |||||||||||||| |||||||||||| | Sbjct 2629 CGAAAGGTCTGGGAAATCTTTTGAAACTTGGTCGTGCTGGGGATTGAGCATTGCAATAGT 2688 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||| |||||||||||| |||||||||| || | ||||| | | |||||| ||||| Sbjct 2689 TGCTCATCAACGAGGAATTCCTAGTAAGCACGACTTATCAGGTTGTGCTGATTATGTCCC 2748 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 2749 TGCCCTTTGTA 2759 Score = 273 bits (302), Expect = 4e-71 Identities = 213/251 (85%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 83 GACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA 141 |||||| |||| ||||| | ||||||| |||||||||||||||||||||||||||| || Sbjct 14850 GACTATTGGCTTTAAGCCAAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCCCTTTGA 14791 Query 142 TGTT-CTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC---ACCTTGGC 197 |||| |||||||||||||||||||||||||| || ||||||||| | |||||||| Sbjct 14790 TGTTTCTGGGCCGCACGCGCGCTACACTGACCAAGACAACGAGTTTGTTTTAACCTTGGC 14731 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || |||||||||| |||||| | ||||| |||||||||||||| |||||||||||| | Sbjct 14730 CGAAAGGTCTGGGAAATCTTTTGAAACTTGGTCGTGCTGGGGATTGAGCATTGCAATAGT 14671 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||| |||||||||||| |||||||||| || | ||||| | | |||||| ||||| Sbjct 14670 TGCTCATCAACGAGGAATTCCTAGTAAGCACGACTTATCAGGTTGTGCTGATTATGTCCC 14611 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 14610 TGCCCTTTGTA 14600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199535872