Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq43 120 5e-25 seq34 120 5e-25 seq33 120 5e-25 seq8 120 5e-25 seq13 114 2e-23 seq36 111 3e-22 seq12 107 3e-21 >seq43 Length=2303 Score = 120 bits (132), Expect = 5e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | ||||||| ||||||||| |||||||| ||| | || | Sbjct 397 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTCATGCGGCTGGTTGAAAGGCCAAT 340 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| Sbjct 339 GCCGCGAAGCTACCATCTGCTGGATAACAGCTGAACGCCTCTAAGTTGGAATCCATGC 282 >seq34 Length=2752318 Score = 120 bits (132), Expect = 5e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | ||||||| ||||||||| |||||||| ||| | || | Sbjct 16602 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTCATGCGGCTGGTTGAAAGGCCAAT 16545 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| Sbjct 16544 GCCGCGAAGCTACCATCTGCTGGATAACAGCTGAACGCCTCTAAGTTGGAATCCATGC 16487 >seq33 Length=10039 Score = 120 bits (132), Expect = 5e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | ||||||| ||||||||| |||||||| ||| | || | Sbjct 8896 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTCATGCGGCTGGTTGAAAGGCCAAT 8953 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| Sbjct 8954 GCCGCGAAGCTACCATCTGCTGGATAACAGCTGAACGCCTCTAAGTTGGAATCCATGC 9011 >seq8 Length=107663 Score = 120 bits (132), Expect = 5e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | ||||||| ||||||||| |||||||| ||| | || | Sbjct 103657 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTCATGCGGCTGGTTGAAAGGCCAAT 103600 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| Sbjct 103599 GCCGCGAAGCTACCATCTGCTGGATAACAGCTGAACGCCTCTAAGTTGGAATCCATGC 103542 >seq13 Length=37301 Score = 114 bits (126), Expect = 2e-23 Identities = 100/119 (84%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGC-AG 59 |||||||||||||| | ||||||| |||||||||| ||||| || || |||| | Sbjct 6495 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTTATGCGGTTGGTCGA-AAGGCTAA 6551 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| Sbjct 6552 TGCCGCGAAGCTACCATCTGCTGGATAACAGCTGAACGCCTCTAAGTTGGAATCCATGC 6610 Score = 114 bits (126), Expect = 2e-23 Identities = 100/119 (84%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGC-AG 59 |||||||||||||| | ||||||| |||||||||| ||||| || || |||| | Sbjct 10865 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTTATGCGGTTGGTCGAA-AGGCTAA 10809 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| Sbjct 10808 TGCCGCGAAGCTACCATCTGCTGGATAACAGCTGAACGCCTCTAAGTTGGAATCCATGC 10750 >seq36 Length=5949 Score = 111 bits (122), Expect = 3e-22 Identities = 99/119 (83%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGC-GGCTGTCTGACCAGGCAG 59 |||||||||||||| | ||||||| |||||||||| ||| ||||| ||| | || Sbjct 297 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTTATGCCGGCTGGTTGAAAGGCCAA 354 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||| Sbjct 355 TGC-GCGAAGCTACCATCTGCTGGATAACAGCTGAACGCCTCTAAGTTGGAATCCATGC 412 Score = 107 bits (118), Expect = 3e-21 Identities = 99/119 (83%), Gaps = 5/119 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGC-AG 59 |||||||||||||| | ||||||| ||||||||| | |||| || || |||| | Sbjct 4625 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTAT-GCGGTTGGTCGAA-AGGCTAA 4570 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| Sbjct 4569 TGCCGCGAAGCTACCATCTGCTGGATAACAGCTGAACGCCTCTAAGTTGGAATCCATGC 4511 >seq12 Length=4600585 Score = 107 bits (118), Expect = 3e-21 Identities = 95/116 (82%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | ||||||| ||||||||| |||||||| ||| | || | Sbjct 192774 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTCATGCGGCTGGTTGAAAGGCCAAT 192831 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||||||||||||||||||||||| | |||||||||||| ||| |||||||| Sbjct 192832 GCCGCGAAGCTACCATCTGCTGGATAACAGCTGAACGCCTCCAAGCTGGAATCCAT 192887 Score = 102 bits (112), Expect = 1e-19 Identities = 97/119 (82%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGC-AG 59 |||||||||||||| | ||||||| |||||||||| |||| || || |||| | Sbjct 37744 GTACGAGAGGAACC-CTTCATTCAGA-TAATTGGTTTACGCGGTTGGTCGA-AAGGCTAA 37800 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 || ||||||||||||||||||||||| | |||||| |||||||||| |||||||||| Sbjct 37801 TGACGCGAAGCTACCATCTGCTGGATAACAGCTGAATGCCTCTAAGTTGGAATCCATGC 37859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199611136