Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq47 342 4e-89 seq45 188 6e-43 seq49 96.9 3e-15 >seq47 Length=1968370 Score = 342 bits (378), Expect = 4e-89 Identities = 771/1149 (67%), Gaps = 25/1149 (2%) Strand=Plus/Plus Query 65797 CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAA 65856 ||||| | ||| | ||||| ||||| | || || | |||||||||||||||||||| Sbjct 705814 CATCAACATAAAGGCATCGGCAAGACCGTTGACACCTAGACCGATGGGACGATGACGCAT 705873 Query 65857 ATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAAT 65915 || || || ||| || ||||| ||||| ||||| ||||| |||||||| || || | Sbjct 705874 GTTTGAGCG-CTCAGCTTCAGGCACAGGATAGTAGTTGATGTCGATAATCTTGTTTAAGT 705932 Query 65916 TGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGA 65974 |||| ||||| || | || | | ||| |||| | || ||||||||| || Sbjct 705933 TGCGCGTCACAACCTTGACAACATCGT-GCAACTTTTGGAAATCAAACACTT-------- 705983 Query 65975 TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCT 66034 || || | | ||||| |||| | || ||| || | ||||| |||||| Sbjct 705984 -CGCGATTCTTG------ACAAAGGTGGGCAAAGCCAGACTGGCCAAATTGCATACAGCT 706036 Query 66035 ATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTG 66094 | ||||| ||| || |||||||| || || || || ||||| ||||| || ||| Sbjct 706037 ACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCACTTGATCGTG 706096 Query 66095 CCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTG 66154 ||||| ||||| || || ||||| || || || |||||||||| |||| | || Sbjct 706097 CCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCATGAAGGGGCCA 706156 Query 66155 CCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT 66214 || ||||| ||| | ||| | |||||| | ||| || ||||||| || | Sbjct 706157 CCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGAGCTTCTGTGCCTTGACAACTTGG 706216 Query 66215 ACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT 66274 ||| | ||||| |||||||| || | ||| || | || || || ||||| || Sbjct 706217 CGCGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTCTCGCCCCACACC 706276 Query 66275 TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACA 66334 ||| |||| ||| | | ||| || | || ||| ||||||| || ||| ||| Sbjct 706277 TCGTGAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACCATTCTCTTCGACA 706336 Query 66335 CGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCC 66394 || ||| || |||||||| ||||| | ||| ||||| || || || || || | |||| Sbjct 706337 CGCTTCATGAAAAGATCAGGGATCCATAAGGCATAGAACAGGTCACGCGCGCGATTCTCC 706396 Query 66395 TCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCC 66454 || ||||| || ||||| | ||| |||||| || | || | ||||| || || Sbjct 706397 TCCTTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGGTGCCAGGGCTCG 706456 Query 66455 AGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACA 66514 |||||||||||||| | ||| || ||| ||||||||| ||||| |||||||| Sbjct 706457 AGGTAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACATAGCGAGCCGTG 706516 Query 66515 TTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 || ||| | || || | ||| || |||| ||||| || | |||||||| || ||||| Sbjct 706517 TTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTGGTACCAGCGATG 706576 Query 66575 GGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAG 66634 || || ||||| || | ||| | || ||||| || ||||| || ||||| || Sbjct 706577 TACGAGCCGGAAGCCCGGATCTGGTGGATGTTGAGACCGATGCCACCCGCGGTCTTGGAA 706636 Query 66635 A--TGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGG 66692 | ||| |||| ||| || || | ||||| ||||| || || |||| |||| Sbjct 706637 ATTTGGGAGCA-AAT-TTTCAGAGTTTCATAGATGCCTTCAATCGAATCCTCCTTCATGG 706694 Query 66693 TCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTG 66752 ||| | |||| || || || || || || |||| ||| |||||||| Sbjct 706695 TCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTGAACAGGGTGGGAC 706754 Query 66753 TAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT 66812 | ||||| |||||||| | ||||||| ||||| ||||| ||| | | || || | Sbjct 706755 TCGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATGGCGCCTTCGATAT 706814 Query 66813 TTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGC 66871 ||||| ||||| || | | |||| ||||||| | || || || || ||| | | | Sbjct 706815 CCTCGCCGTGAATACCCACAGCCACA-CGCATCAACATGTGCTGCGGTCGCTCGGCAATC 706873 Query 66872 CGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAA 66931 | |||| | || || || | |||||||| ||||||| |||||||| ||| Sbjct 706874 TTGCCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCAAAGTAGTTGTAG 706933 Query 66932 TTGAAATCG 66940 ||||||| Sbjct 706934 CCGAAATCG 706942 >seq45 Length=2374188 Score = 188 bits (208), Expect = 6e-43 Identities = 336/486 (69%), Gaps = 6/486 (1%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||| || || ||||| ||||| |||||| || | ||||| | |||| ||| || || Sbjct 1436127 GAAGGCCGAATGGGCATTCAAGTGGATCTCC--TCAAACGG-TGTGTTTGCTGAGCGTTT 1436183 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | | || ||||| | || |||||| | || ||| ||| ||||||||| | |||||||| Sbjct 1436184 GGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGTTTGCCTCCATCTTTTG 1436243 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | ||||| ||||| || ||||| |||||||| |||||||| ||| | || || || || Sbjct 1436244 GCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAACGAGCTCATCTCGCGTGA 1436303 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC 61673 ||| || | || || |||||| | | || ||| ||| |||| || | || Sbjct 1436304 CGAAGGTCTCCACACCGACTTTGCTTGTCTCCTTTTCT--CGC-ATCTCCGCAAGCAGCC 1436360 Query 61674 GTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCT 61733 | |||||||| | || | || ||||| || |||||| |||| || || Sbjct 1436361 TCCATCTGAGCGTGTCCTCGGTATCATCCGCGAGGCAGTCGAGATCGAAAAGGAGTTCCT 1436420 Query 61734 GACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATAT 61793 ||| ||||||||||||| | || ||||||||||| || |||| || || || Sbjct 1436421 GACCACCGCTTTGCCCGTCGCTCTGATCGGCATGAACGCGACTCTCATGTGCCAATACAT 1436480 Query 61794 TGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAA 61853 ||| ||||| || |||||||| | ||| | || || | | |||| || | | Sbjct 1436481 TGAGTTTGTCGCTGACCGTCTCCTCGTCTCGCTCGGCATCGACAAGTTCTACAAGGCTAC 1436540 Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||| || || || ||||||||||| || || | |||||||| || || || ||||| Sbjct 1436541 CAACCCCTTCGACTTTATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTTGAGAA 1436600 Query 61914 ACGTGT 61919 ||||| Sbjct 1436601 GCGTGT 1436606 >seq49 Length=1681262 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 65089 CTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGGCCAGC 65148 || ||| |||| | | || | | ||| | ||| || |||||||| |||||||| || Sbjct 828081 CTTGATGGCATCAACGGCAGGCCGGGTTCGAAGGTAATACATGCCCGTCTTGAGACCCTT 828140 Query 65149 ACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCAT 65208 ||||| || || |||||||| | | | |||| || |||||||| || || Sbjct 828141 CTTCCAAGAGTAAAAGTGCATCGACGTCAGTCGGCCATAGTTTGGCTCGGCAACGAACAG 828200 Query 65209 ATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACG 65268 |||||||||||| ||| |||||| || | |||| || || ||||||||||| || Sbjct 828201 ATTCAACGACTGGGACTGGTCGATGAAAGCAGCACGGTCGGCGGCCATGTCAATAATGAC 828260 Query 65269 ACGTCCCGATATCTCCCAGACGGTCTTGTACAG 65301 ||| || | ||||| || ||||||||||| Sbjct 828261 ACGCTGAGACAGTTCCCACACTGTCTTGTACAG 828293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567762577360