Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1189 80.6 8e-11 seq1139 80.6 8e-11 >seq1189 Length=33679 Score = 80.6 bits (88), Expect = 8e-11 Identities = 106/142 (75%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 1691 ACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTG 1750 ||||||| || || |||||||||||||||||||||| | || || || | ||||||| Sbjct 27037 ACGCACGCCAAATCTTTGACTCACGCGGTAACCCAACCGTCGAGGTGGATCTGTACACTG 27096 Query 1751 AATCTGG-TGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAA 1809 || || ||| ||| | || | | ||||| ||||| ||||||||||| |||||| Sbjct 27097 AAAAAGGATGC-TTCAG-AGCCGCA--GTTCCATCAGGTGCATCAACTGGAATCCACGAA 27152 Query 1810 GCAGTAGAACTTCGTGATGGTG 1831 || || || |||||||||| Sbjct 27153 GCCAATGAGCTCCGTGATGGTG 27174 >seq1139 Length=5442 Score = 80.6 bits (88), Expect = 8e-11 Identities = 106/142 (75%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 1691 ACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTG 1750 ||||||| || || |||||||||||||||||||||| | || || || | ||||||| Sbjct 3532 ACGCACGCCAAATCTTTGACTCACGCGGTAACCCAACCGTCGAGGTGGATCTGTACACTG 3591 Query 1751 AATCTGG-TGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAA 1809 || || ||| ||| | || | | ||||| ||||| ||||||||||| |||||| Sbjct 3592 AAAAAGGATGC-TTCAG-AGCCGCA--GTTCCATCAGGTGCATCAACTGGAATCCACGAA 3647 Query 1810 GCAGTAGAACTTCGTGATGGTG 1831 || || || |||||||||| Sbjct 3648 GCCAATGAGCTCCGTGATGGTG 3669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156034779323976