Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq55013 178 5e-40 seq39681 104 8e-18 seq36628 100 1e-16 seq22457 91.5 5e-14 seq55168 89.7 2e-13 >seq55013 Length=475 Score = 178 bits (196), Expect = 5e-40 Identities = 278/404 (69%), Gaps = 33/404 (8%) Strand=Plus/Minus Query 6398 GCAGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAG 6457 |||||| ||| | || ||||| ||||| || |||||| || || ||||| || || Sbjct 418 GCAGTACCTTCTATGATTCGCTCAGCTTCGTCTGGGTCATAAATCCCCGCAAACCCAAAT 359 Query 6458 GCCAGACGGGCACACTGAATCATGGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGC 6517 |||| |||||||| ||||||||||||||||| |||||||| || || ||||| ||| Sbjct 358 GCCAAGCGGGCACATTGAATCATGGCTTTATGGCGTAACATGCGCTTTGGATGACTGTGC 299 Query 6518 CACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCC 6577 || || || || || ||| || ||||| | Sbjct 298 CATGGGCCTGTA---------------------------GG---GCGTCGACATTCCGTC 269 Query 6578 ATCCACTCGGTAACGCAGATCGGATGATTACGGTCTTTGCGGTAAATCCGGCATGTACAG 6637 || | || || || | | ||||||| |||||||| ||||| || ||||| || ||| Sbjct 268 ATGAATTCAGTGACTTCGGTAGGATGATGGCGGTCTTTTCGGTAGATACGGCAGGTGCAG 209 Query 6638 GATTCATTGTCCTGCTCAAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGG 6697 | | || ||| |||| ||| |||||||||||| || | |||||| || |||||||| Sbjct 208 GCCTGATCGTCTTGCTGAAACGTCATGCCATCAAAGTGTTCGTTTTCGTTAATGATGCGT 149 Query 6698 GACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAA 6757 ||||| ||||||| ||| || ||||| ||||| ||| ||||| || || |||||| Sbjct 148 GACCAACCATCAATGCCAACGACCGGCACGAT---GTTACCTTTATCGGGAAAAGCGTAA 92 Query 6758 ATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGAT 6801 ||||| || || | ||||| ||||| || || |||| || || Sbjct 91 ATTTCCTTGGTAAAGGGATTGAGGCCATATTGACTGGCAACAAT 48 >seq39681 Length=3370 Score = 104 bits (114), Expect = 8e-18 Identities = 102/128 (80%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 16905 GGGTTAGTTGGTAAAAATGCCCGCTC-CCTCATCCTCTGGACAGAACGCGGAGCAGCCCG 16963 ||||||||| |||| | || ||| ||| || |||| ||||||||| || ||||| || Sbjct 28 GGGTTAGTTAATAAACACACCA-CTCACCTTATTCTCTAGACAGAACGAGGCGCAGCACG 86 Query 16964 TCATGC-AAAATGCTCGAAACCGATCAGGCGTGGGAAGTNTTCGAAAACTGGAAAGACTG 17022 ||| || |||||||| ||||||||||| || |||||||| |||||||| | |||| || Sbjct 87 TCACGCCAAAATGCTAGAAACCGATCAAGCATGGGAAGTATTCGAAAAGTTAGAAGATTG 146 Query 17023 CTATTTCA 17030 ||||||| Sbjct 147 TTATTTCA 154 >seq36628 Length=791 Score = 100 bits (110), Expect = 1e-16 Identities = 101/128 (79%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 16905 GGGTTAGTTGGTAAAAATGCCCGCTC-CCTCATCCTCTGGACAGAACGCGGAGCAGCCCG 16963 ||||||||| |||| || ||| ||| || |||||||||||||| || ||||| || Sbjct 602 GGGTTAGTTAATAAACCA--CCACTCACCTTATTCTCTGGACAGAACGAGGCGCAGCACG 545 Query 16964 TCA-TGCAAAATGCTCGAAACCGATCAGGCGTGGGAAGTNTTCGAAAACTGGAAAGACTG 17022 ||| ||||||||| |||||| ||||||| |||||||| |||||||| | |||| || Sbjct 544 TCACACCAAAATGCTAGAAACCAATCAGGCATGGGAAGTGTTCGAAAAGTTAGAAGATTG 485 Query 17023 CTATTTCA 17030 ||||||| Sbjct 484 TTATTTCA 477 >seq22457 Length=815 Score = 91.5 bits (100), Expect = 5e-14 Identities = 77/94 (82%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 16936 TCCTCTGGACAGAACGCGGAGCAGCCCGTCATGC-AAAATGCTCGAAACCGATCAGGCGT 16994 |||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||||| || | Sbjct 432 TCCTGTGGACTGAACGCGGCGCAGCACGTCATGCCAAAATGCTAGAAACCGATCAAGCAT 373 Query 16995 GGGAAGTNTTCGAAAACTGGAAAGACTGCTATTT 17028 ||||||| || ||||| | | || || ||||| Sbjct 372 GGGAAGTATTTGAAAAGTTAGAGGATTGTTATTT 339 >seq55168 Length=2163 Score = 89.7 bits (98), Expect = 2e-13 Identities = 84/106 (79%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 16926 CGCTCCCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCATGC-AAAATGCTCGAAACC 16984 ||||| || || || ||||| | ||| | ||||| || ||||| |||||||| |||||| Sbjct 1967 CGCTCACTTATTCTGTGGACCGGACGTGAGGCAGCACGCCATGCCAAAATGCTAGAAACC 2026 Query 16985 GATCAGGCGTGGGAAGTNTTCGAAAACTGGAAAGACTGCTATTTCA 17030 ||||| || |||||||| |||||||| | |||| || ||||||| Sbjct 2027 GATCAAGCTTGGGAAGTGTTCGAAAAGTTAGAAGATTGTTATTTCA 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175428142987620