Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_009761.3 Length=42232 Score E Sequences producing significant alignments: (Bits) Value seq3883 201 3e-47 >seq3883 Length=4185 Score = 201 bits (222), Expect = 3e-47 Identities = 403/592 (68%), Gaps = 14/592 (2%) Strand=Plus/Plus Query 24045 ACCGAAGACGAAAATATTATACTCTTGTTTCGCTTGCATTCAAGAATCTAAAGAATCCGA 24104 ||| || || ||| ||||| ||||| || || || ||||| |||||||| || || Sbjct 136 ACCCAAAACTAAAGAGTTATATAGTTGTTATGCATGTATCCAAGATTCTAAAGAGTCTGA 195 Query 24105 CACTCAAACGAATCTCAATACAGGTAGCAAATTCATTAAAACTATTATTATCAGAGATAC 24164 || ||||| | | | ||||||||||| || || || |||||| ||||||| ||||| | Sbjct 196 TACGCAAACAAGTATTAATACAGGTAGTAAGTTTATAAAAACTTTTATTATAAGAGACCC 255 Query 24165 ACGAGGTGATTATAAACCAACAAATAAGCATTACGTCTTGCATGAAGGGCAAAGATTTAA 24224 |||||||||||||||| | ||||||||||| || |||| ||||| | | | | Sbjct 256 TAGAGGTGATTATAAACCTAGTAATAAGCATTATGTTATGCACGAAGGTATTCGCTATGA 315 Query 24225 CATCAAATATGTAAAGCCAGATTATCAAGATAAATCTTATTTGCGTATCTATGGCGAGGT 24284 | || ||| | ||||||||||||| || ||||| | || || ||||||| ||||| Sbjct 316 TGTGAAGTATTTTAAGCCAGATTATCGTGACAAATCATTCTTACGAGTCTATGGTGAGGT 375 Query 24285 GGTCATTTAATGGGGGCAAGAATTGAAAGTAATAACATCGAACAAGGTTTGAAAAATGCA 24344 | | || || |||| || | |||||||| |||| || ||| || || ||||| | Sbjct 376 GTTAATATAGTGGGTGCTAAAATTGAAAAAAATACAATAGAATCTGGATT-AAAAAGAGA 434 Query 24345 GTTTTAAAAATGAATT--TAAATAG--TAATGTAATTGTCAAAGCTGGGGCTATGTCATT 24400 ||| | || || | || | ||| | || | | || || ||| || || Sbjct 435 GTT---ACTATCTTTTCCGAGATTGCAGAATAAAGTTTTAAGAGAAGGTGCTTCTTCTTT 491 Query 24401 AGTCCCGCTTTTAAAAAGTAATACACCT---TTTGCGAATACTAAAAAGCATGCTCGCGA 24457 | |||| | ||| | ||||||||| || || | ||| ||||| || Sbjct 492 AATCCCATTATTAGTTAAAAATACACCTAAAAGTGAGAGAAGCAAA---CATGCAAAAGA 548 Query 24458 TCACATAGCTGTTTCTAATGTGAAAACAGACAGACACACAAGTGAGAAAATTGTTACAAT 24517 || | || |||||||||| ||||| || ||| | | ||| ||| ||| ||| | Sbjct 549 CCATGTTGCAATTTCTAATGTCAAAACTGATAGAGATTCTTATGAAAAATATGTAACAGT 608 Query 24518 TGGTTACGCTAAAGGCGTCTCACATCGTATTCATGCAACAGAATTTGGAACAATGTACCA 24577 ||||| | ||||| ||| | ||||||| | ||||||||||| ||||| || Sbjct 609 AGGTTATGAAAAAGGATATAGTCATAGAATTCATGTCATTGAATTTGGAACCATGTATCA 668 Query 24578 AAAACCACAATTGTTTATAACAAAAACAGAAAAGCAAGGGAAAAACAAAGTT 24629 |||||||||||||||| | || |||| ||||| || | | ||||| |||| Sbjct 669 AAAACCACAATTGTTTGTCACTAAAAGTGAAAAAGAACGTAGAAACATAGTT 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134982439324900