Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq2730 782 0.0
>seq2730
Length=4592
Score = 782 bits (866), Expect = 0.0
Identities = 763/977 (78%), Gaps = 22/977 (2%)
Strand=Plus/Plus
Query 1948 ATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGT 2007
||||||||| | |||||||| |||||||||| |||| | ||||| || ||||| | |||
Sbjct 1 ATGATCGCTTTAGACGGTACACCAAACAAAGCTAAATTAGGTGCTAATGCTATCTTAGGT 60
Query 2008 GTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTAC 2067
|| |||||||| ||||| || || || ||||||| | | | ||| | |||| ||
Sbjct 61 GTTTCTATCGCAGTAGCTCGTGCTGCAGCTGACTTCTTAGGTCAACCATTATACAAATAT 120
Query 2068 CTTGGCGGATTCAACACTAAAGTTC---TTCCAACTCCAATGATGAACATCATCAACGGT 2124
||||| ||||||||| | |||| | ||| |||||||||||||| | ||||||
Sbjct 121 CTTGGTGGATTCAACGGT---GTTCAATTACCAGTACCAATGATGAACATTGTTAACGGT 177
Query 2125 GGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCA 2184
|||||||||||||| || |||||||| |||||||| || |||||| |||| | |||||
Sbjct 178 GGTTCTCACTCAGATGCACCAATCGCATTCCAAGAGTTCATGATTTTACCAGTAGGTGCT 237
Query 2185 CCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAG-AAAAT 2243
| ||||||||||||| | |||||||| || ||||||||||| |||| |||||
Sbjct 238 GAATCATTCAAAGAAGCTTTACGTTGGGGAGCAGAAATCTTCCATAA-CTTAGCTAAAAT 296
Query 2244 CCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTT 2303
| | ||| ||||| | | ||| || ||||||||||||||||||||||| ||| ||
Sbjct 297 CTTAAAATCTCGTGGTTTAGTAACTGCAGTAGGTGACGAAGGTGGTTTCGCTCCTAAATT 356
Query 2304 CGACGGAACTGAAGATGGTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGT 2363
|| || |||||||| ||||||||||| || | |||| ||| |||| | ||| | |
Sbjct 357 TGAAGGTACTGAAGACGGTGTTGAAACAATTTTAGAAGCAATCAAAGCAGTTGGTTTAGA 416
Query 2364 ACCAGGTAAAGACGTATTTATCGGACTTGACTGTGCATCATCTGAATTCTACGATGCAGA 2423
|||||||||||| ||||| | ||| | ||||||||| |||| ||||||||||| |
Sbjct 417 ACCAGGTAAAGATGTATTCTTAGGATTCGACTGTGCAGCATCAGAATTCTACGAAAATGG 476
Query 2424 ACGTAAAGTTTACGACTACACTAAATTTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGC 2483
|||| |||||||| ||||||| ||||||||| | |||| ||| || |||
Sbjct 477 -CGTA-----TACGACTATGCTAAATTCGAAGGTGAAAATGGTGCTAAACGTTCTTCTGA 530
Query 2484 AGAACAAATCGACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGA 2543
||||||| | |||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 531 AGAACAAGTAGACTTCCTTGAAGAATTAGTAAACAAATACCCAATCATCACTATCGAAGA 590
Query 2544 TGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAA 2603
||||||||| ||||| ||||||||||| |||||| ||||||||| ||| | || |
Sbjct 591 TGGTATGGATGAAAATGACTGGGACGGCTGGAAACTTCTTACTGACCGTATCGGCGACCG 650
Query 2604 AGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGC----TTACCTTGAAAAAG 2659
|| ||||| || ||||| || || |||||||| ||||||| ||| || |||
Sbjct 651 CGTACAATTAGTAGGTGATGATTTATTCGTAACAAACACTGAAAAATTATCTG----AAG 706
Query 2660 GTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGA 2719
|||| | | || | |||||||||| | || |||||||||||||| |||||||| |
Sbjct 707 GTATCGAAAAAGGTATCGGTAACTCAATCTTAATTAAAGTTAACCAAATTGGTACTTTAA 766
Query 2720 CTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCAC 2779
| ||||| || || || ||||||||||| || ||||||| ||||| ||||| |||||||
Sbjct 767 CAGAAACATTCGAAGCAATCGAAATGGCTCAAAAAGCTGGTTACACTGCAGTTGTATCAC 826
Query 2780 ACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTG 2839
|||||||||||||||| |||||| | |||||| ||||||| |||||||||||||| ||||
Sbjct 827 ACCGTTCAGGTGAAACAGAAGATACTACAATCTCTGATATCGCAGTTGCAACTAATGCTG 886
Query 2840 GTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGC 2899
| ||||| || ||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 887 GCCAAATCAAAACAGGTTCATTATCAAGAACTGACCGTATTGCTAAATACAACCAATTAT 946
Query 2900 TTCGTATCGAAGACCAA 2916
| |||||||||||| ||
Sbjct 947 TACGTATCGAAGACGAA 963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155994068027700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |