Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq2730 782 0.0 >seq2730 Length=4592 Score = 782 bits (866), Expect = 0.0 Identities = 763/977 (78%), Gaps = 22/977 (2%) Strand=Plus/Plus Query 1948 ATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGT 2007 ||||||||| | |||||||| |||||||||| |||| | ||||| || ||||| | ||| Sbjct 1 ATGATCGCTTTAGACGGTACACCAAACAAAGCTAAATTAGGTGCTAATGCTATCTTAGGT 60 Query 2008 GTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTAC 2067 || |||||||| ||||| || || || ||||||| | | | ||| | |||| || Sbjct 61 GTTTCTATCGCAGTAGCTCGTGCTGCAGCTGACTTCTTAGGTCAACCATTATACAAATAT 120 Query 2068 CTTGGCGGATTCAACACTAAAGTTC---TTCCAACTCCAATGATGAACATCATCAACGGT 2124 ||||| ||||||||| | |||| | ||| |||||||||||||| | |||||| Sbjct 121 CTTGGTGGATTCAACGGT---GTTCAATTACCAGTACCAATGATGAACATTGTTAACGGT 177 Query 2125 GGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCA 2184 |||||||||||||| || |||||||| |||||||| || |||||| |||| | ||||| Sbjct 178 GGTTCTCACTCAGATGCACCAATCGCATTCCAAGAGTTCATGATTTTACCAGTAGGTGCT 237 Query 2185 CCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAG-AAAAT 2243 | ||||||||||||| | |||||||| || ||||||||||| |||| ||||| Sbjct 238 GAATCATTCAAAGAAGCTTTACGTTGGGGAGCAGAAATCTTCCATAA-CTTAGCTAAAAT 296 Query 2244 CCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTT 2303 | | ||| ||||| | | ||| || ||||||||||||||||||||||| ||| || Sbjct 297 CTTAAAATCTCGTGGTTTAGTAACTGCAGTAGGTGACGAAGGTGGTTTCGCTCCTAAATT 356 Query 2304 CGACGGAACTGAAGATGGTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGT 2363 || || |||||||| ||||||||||| || | |||| ||| |||| | ||| | | Sbjct 357 TGAAGGTACTGAAGACGGTGTTGAAACAATTTTAGAAGCAATCAAAGCAGTTGGTTTAGA 416 Query 2364 ACCAGGTAAAGACGTATTTATCGGACTTGACTGTGCATCATCTGAATTCTACGATGCAGA 2423 |||||||||||| ||||| | ||| | ||||||||| |||| ||||||||||| | Sbjct 417 ACCAGGTAAAGATGTATTCTTAGGATTCGACTGTGCAGCATCAGAATTCTACGAAAATGG 476 Query 2424 ACGTAAAGTTTACGACTACACTAAATTTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGC 2483 |||| |||||||| ||||||| ||||||||| | |||| ||| || ||| Sbjct 477 -CGTA-----TACGACTATGCTAAATTCGAAGGTGAAAATGGTGCTAAACGTTCTTCTGA 530 Query 2484 AGAACAAATCGACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGA 2543 ||||||| | |||| |||||||||||| || ||||||||||||||||||||||||||||| Sbjct 531 AGAACAAGTAGACTTCCTTGAAGAATTAGTAAACAAATACCCAATCATCACTATCGAAGA 590 Query 2544 TGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAA 2603 ||||||||| ||||| ||||||||||| |||||| ||||||||| ||| | || | Sbjct 591 TGGTATGGATGAAAATGACTGGGACGGCTGGAAACTTCTTACTGACCGTATCGGCGACCG 650 Query 2604 AGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGC----TTACCTTGAAAAAG 2659 || ||||| || ||||| || || |||||||| ||||||| ||| || ||| Sbjct 651 CGTACAATTAGTAGGTGATGATTTATTCGTAACAAACACTGAAAAATTATCTG----AAG 706 Query 2660 GTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGA 2719 |||| | | || | |||||||||| | || |||||||||||||| |||||||| | Sbjct 707 GTATCGAAAAAGGTATCGGTAACTCAATCTTAATTAAAGTTAACCAAATTGGTACTTTAA 766 Query 2720 CTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCAC 2779 | ||||| || || || ||||||||||| || ||||||| ||||| ||||| ||||||| Sbjct 767 CAGAAACATTCGAAGCAATCGAAATGGCTCAAAAAGCTGGTTACACTGCAGTTGTATCAC 826 Query 2780 ACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTG 2839 |||||||||||||||| |||||| | |||||| ||||||| |||||||||||||| |||| Sbjct 827 ACCGTTCAGGTGAAACAGAAGATACTACAATCTCTGATATCGCAGTTGCAACTAATGCTG 886 Query 2840 GTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGC 2899 | ||||| || ||||||||||| ||| | ||||||||||||||||||||||||||||| Sbjct 887 GCCAAATCAAAACAGGTTCATTATCAAGAACTGACCGTATTGCTAAATACAACCAATTAT 946 Query 2900 TTCGTATCGAAGACCAA 2916 | |||||||||||| || Sbjct 947 TACGTATCGAAGACGAA 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155994068027700