Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq1617 93.3 1e-14 >seq1617 Length=11810 Score = 93.3 bits (102), Expect = 1e-14 Identities = 186/272 (68%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 27439 GACATGGAGCCTGACGTGGATTTTTACACTAGCTGAGGAGCGCGCGTTTATCCAGTGGGT 27498 ||||||| || || ||||| || || || || ||||||| || | | | ||||| | Sbjct 1415 GACATGGTCTCTCACATGGATATTCACGCTGGCGCAGGAGCGGGCTTCCAAC-AGTGGCT 1357 Query 27499 GCGCAGCCCGAACTACCTCAACAAATGCAATAACTGGTTCACCATGATGATTGACCTCGG 27558 ||||||||| |||||||| || | |||||||| ||||| | | ||| | || Sbjct 1356 GCGCAGCCCTAACTACCTTAATCGCGGACTGAACTGGTTTCGCATGAGGGTGGACATAGG 1297 Query 27559 CGGCAGCGGATTA-CAGGAGCAGACGCTGCACTTTACCGATTATCCGGTGCAGACCAGCA 27617 || ||| | | ||| |||| ||| || || || | ||||| |||||||||| Sbjct 1296 GGG-AGCTGGTCCTCAGTTGCAGGAGCTCCATTTCACTCAGATGCCGGTACAGACCAGCA 1238 Query 27618 TTGATGGCGGCGTGGTGACGTGGACTGGCAATGTTATCGCCAAGAAACTCAATAACACCA 27677 | || |||||||| || || ||||| || | || ||||| || | || ||||| || Sbjct 1237 TAGACGGCGGCGTTGTTACCTGGACGGGTACCGTCATCGCGAACAGGCTAAATAATGCCG 1178 Query 27678 TGGATGAGTTTGACGATGTTCTGGTTGAACTG 27709 ||||| ||||| || | | || |||||| Sbjct 1177 ATGATGATTTTGATGACATCATTGTCGAACTG 1146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144931611868400