Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq1471 239 1e-60 seq1767 172 1e-40 >seq1471 Length=14246 Score = 239 bits (264), Expect = 1e-60 Identities = 297/400 (74%), Gaps = 9/400 (2%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| ||||||||||||| |||||||||||| || |||||| || || | Sbjct 8905 CGATGGTCAGCAGGTCGCCGCCCACCTCGGTCCACGCCAGCCCCACGACCTGGCCCACCT 8964 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | | ||||||||| || |||| ||| || | |||||||| |||||||||| | |||| Sbjct 8965 GGTTCTGCTGCTCCGCGCGGCCATAGGTGTACTTGCGCACACCGAGGAAGTCCGGCAGGT 9024 Query 121 AGTCGGCCGTGACCTTCACC--GAGAAGCGT-TTTTCCAGC-GCATGTTCCTTGACCGCC 176 ||| ||||| ||| |||| | | | | |||| ||| ||| | |||| ||| || Sbjct 9025 TGTCCGCCGTCACCACCACCTGGGGCTCCATCTTTTTGAGCTGCA-GGCCCTTCACCACC 9083 Query 177 TTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAG 236 |||||||||||||| | | || ||| ||||| ||||| || || |||||||||||| Sbjct 9084 TTGCGGCAGATCTTGGACAGCTCGCGTTCCAGCGACCGCACTCCTGCCTCGCGGGTGTAG 9143 Query 237 TAGCGGACGATGTCGCGGATCGTGCCGA--CTTCAAATTCGATCTCGCCCTTCTTCAGGC 294 || || || | || || | ||| || | | | | ||| | ||||| | || Sbjct 9144 TAACGCACCACATCCCGCA--CTGCGGATTCGTGCACCAGCAACTCTTCATTCTTGACGC 9201 Query 295 CATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTT 354 | ||| || |||||||||||| |||||||| |||||||||||| |||||||||| | Sbjct 9202 CGTTGTTCGCCATCTGCTTGGGCAGCAGGTACTTCATGGCGATGTTGGTCTTCTCGTCCT 9261 Query 355 CGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||||| |||| ||||| || || ||||| |||||||| Sbjct 9262 CGGTGTAGCCCGAGAGGCGGATGACCTCCATGCGGTCCAG 9301 >seq1767 Length=10847 Score = 172 bits (190), Expect = 1e-40 Identities = 279/398 (70%), Gaps = 5/398 (1%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||| |||||||| ||||||||||| | ||||||||| ||||| || ||||| || || | Sbjct 1135 CGACGGTCAGCAGTTCGCCGCCCACTTCGGTCCACGCGAGGCCGGTCACCTGGCCCACCT 1194 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | | | || ||||| | |||| || || | |||||||| || ||| | | || | | Sbjct 1195 GGTTTTCCTTTTCGGCAACGCCGAAGGTGTACTTGCGCACCCCCAGGTACTTGTCGATGT 1254 Query 121 AGTCGGCCGTGACCTTCACCGAGAA---GCGTTTTTCCAGCGCATGTTCCTTGACCGCCT 177 | ||| | ||| |||| | ||| | || | | ||||||| ||| Sbjct 1255 TCTTGGCGTTCACCACCACCTTGGCCCTGCGGCGGCCGAGGACCAGCGCCTTGACGACCT 1314 Query 178 TGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGT 237 | ||||||| ||||| | || |||||| ||||||||||| || || |||||||||||| Sbjct 1315 TCCGGCAGACCTTCGAAACCTCGCGCTCGAGGCCACGCACGCCCGCCTCGCGGGTGTAGA 1374 Query 238 AGCGGACGATGTCGCGGATCGTGCCGAC-TTCAAATTCGATCTCGCCCTTCTTCAGGCCA 296 |||| |||||||||||||| | | | | ||| | | ||| | ||| | || Sbjct 1375 AGCGCACGATGTCGCGGATGGCGTCTTCGGTCACCGAC-AGCTCTTCGCGCTTGATTCCG 1433 Query 297 TTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCG 356 ||| | |||||||| || | ||||| ||||||||||| ||||||||| ||| Sbjct 1434 TTGTTCTTCATCTGCTTCGGGACAAGGTAGCGCTGGGCGATGTTGACCTTCTCGTCCTCG 1493 Query 357 GTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||| |||| |||||| |||| |||||||| || || Sbjct 1494 GTGTAGCCCGACAGGCGGATCAGCTCCATCCGATCGAG 1531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158344894912