Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq3707 132 1e-28 seq377 104 5e-20 >seq3707 Length=5177 Score = 132 bits (146), Expect = 1e-28 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 237 CTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCA 296 ||||| ||||| ||||||||| |||||||| || || || || || |||||| |||| Sbjct 1341 CTCAGTTCTCCAGCACCCAGGTATCCTTGGTACCGCCCCCCTGGGAGCTGTTGACCACCA 1400 Query 297 GCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGC 356 | ||||| || || ||||| || ||||||| || |||||||||| |||| |||||||| Sbjct 1401 GAGAGCCCTCTTTGAGCGCGACACGGGTCAGCCCCCCGGGCACCATGCGGACTTCCTTGC 1460 Query 357 CCGAGAGCACGAAGGGTCGCAAGTCG 382 |||| |||||||| || |||| |||| Sbjct 1461 CCGACAGCACGAACGGCCGCAGGTCG 1486 >seq377 Length=293092 Score = 104 bits (114), Expect = 5e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 249 CCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCT 308 |||||||||| |||||||| || ||||| ||||||||||| || |||||||| || |||| Sbjct 242958 CCACCCAGGTATCCTTGGTACCGCCGCCCTGCGACGAGTTCACAACCAGCGAACCCTCCT 243017 Query 309 TCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCG 345 | || || |||||||||| || || ||||||| ||| Sbjct 243018 TGAGGGCGACGCGGGTCAGCCCCCCCGGCACCATGCG 243054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119946721600