Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq969 239 2e-58 seq2015 138 4e-28 seq736 104 8e-18 >seq969 Length=89018 Score = 239 bits (264), Expect = 2e-58 Identities = 403/574 (70%), Gaps = 11/574 (2%) Strand=Plus/Plus Query 54279 GCCGGGCAATATGAGCGGCAAAAAGCGATGCTCACCCAGTCAGAGATCAAACTGCTTCAC 54338 ||||||||||| |||||||| ||| |||| | ||||| || ||||| ||||| ||| Sbjct 72963 GCCGGGCAATACGAGCGGCATAAACAACTGCTGGCACAGTCGGA-ATCAAGCTGCTGCAC 73021 Query 54339 GCCCAGGTGAACCCCCATTTTTTGTTTAATGCGCTTAACACCATTAAAGCGGTGATCCGT 54398 |||||||| ||||| ||||| ||||||||||||| || || | ||||||||||| Sbjct 73022 GCCCAGGTCAACCCGCATTTCCTGTTTAATGCGCTGAATACGCTGGTGGCGGTGATCCGC 73081 Query 54399 CGCGACAGCGAACAGGCCAGCCAGCTGGTGCAGTATCTTTCCACTTTTTTCCGCAAAAAC 54458 || || |||| | || || |||||||||||| ||| || || |||||||| |||||| Sbjct 73082 CGGGATGGCGATCGTGCTTGCGAGCTGGTGCAGTCTCTCTCTACCTTTTTCCGTAAAAAC 73141 Query 54459 TTAAAGCGGCCTTCGGAGTTTGTTACTCTCGCCGACGAAATTGAACATGTGAATGCTTAT 54518 | || || | | || || | || || || || ||||| ||||||||||| ||| Sbjct 73142 CTCAAACGCTCCGCTGATGAAGTGAGCCTGGCAGATGAGATTGAGCATGTGAATGCCTAT 73201 Query 54519 CTGCAAATTGAAAAGGCGCGCTT--CCAGTCGCGGTTGCAGGTCAACATTGCTATTCCGC 54576 ||||| || ||||| || ||||| || | ||| || || | || | | ||| Sbjct 73202 CTGCAGATAGAAAAAGCCCGCTTTGCCGAT--CGGCTGGAGATTGCGGTTTCGCTGCCGG 73259 Query 54577 AAGAA-TTATCCCAG-CAGCAATTGCCCGCGTTTACCCTGCAACCGATAGTGGAAAACGC 54634 | ||| | | | | ||| |||| || || | || |||||||| |||||||| || Sbjct 73260 AGGAACTGCTGGCGGTCAG--GCTGCCTGCCTTCTCGCTCCAACCGATTGTGGAAAATGC 73317 Query 54635 CATTAAACATGGGACATCACAACTGCTGGATACAGGGCGAGTGGCAATCAGCGTCCGACG 54694 ||||| || || || || || ||||||| | || || | | ||| | | ||| || Sbjct 73318 TATTAAGCACGGCACTTCGCACCTGCTGGGGATTGGCCGGATCGATATCGGTGCCCGGCG 73377 Query 54695 TGAGGGGCAACATTTGATGCTGGAGATCGAAGACAATGCCGGTTTGTATCAACCGGTA-A 54753 ||||| | || || ||||| || | |||||||||||||||| || || | | Sbjct 73378 CGAGGGCGATAATCTGTTGCTGCAGGTGACCGACAATGCCGGTTTGT-TCCGCCAGCAGG 73436 Query 54754 CCAATGCCAGTGGGCTGGGGATGAATCTGGTGGATAAGCGTTTACGTGAACGGTTTGGCG 54813 | | ||| ||| |||| |||||||||||||||| |||| | |||| || | || | Sbjct 73437 CTGGCGGCAGCGGGTTGGGCATGAATCTGGTGGATAGGCGTATCCGTGTGCGTTACGGTG 73496 Query 54814 ATGACTATGGGATAAGCGTCGCCTGTGAGCCTGA 54847 ||| ||| ||| | |||||||||| ||||| Sbjct 73497 ATGGCTACGGGGTGCAGATCGCCTGTGAACCTGA 73530 >seq2015 Length=8975 Score = 138 bits (152), Expect = 4e-28 Identities = 615/950 (65%), Gaps = 43/950 (5%) Strand=Plus/Minus Query 45860 CCTTTTAACATCCGGATGGTCCGGGAGACGGCGGACAGCACCT-CGGACCAGCTGCAGAA 45918 || ||||| ||| || |||| || | || | ||||||||| | | || | |||| Sbjct 8503 CCGTTTAATATCAGGGTGGTACGTAACACTCCAGACAGCACCAGCAGTAAAGTCG-AGAA 8445 Query 45919 TAAGACGCTCTGGTCGTCATACACCGAAATCATCGATGTGAAACAGTGCTACCCGAACAC 45978 ||| || || ||||| || |||||||||||||| |||| ||||||| || || Sbjct 8444 TAAAACCCTGTGGTCCAGCTATACCGAAATCATCGACAGCAAACTCAGCTACCCAAATAC 8385 Query 45979 GGCCATTGTGGGGCTGCAGGTGGATGCGGAGCAGTTTGGTGGCCAGCAGATGACGGTGAA 46038 || | || ||||| | || | ||||||| || || | | || || Sbjct 8384 CGCGCTGGTAGGGCTCTCTTTTGACTCTTCGCAGTTTCAGGGGGTGCCAAAGC--GT-AA 8328 Query 46039 CTACCATATCCGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCAC 46098 ||| | || || || | || ||| | || || |||||| ||||||| ||||| Sbjct 8327 CTATCTGATTCGCGGCCTGATGATCAAAGTCCCCAGCAACTATACGCCGGAAACCCGCAC 8268 Query 46099 GTACAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTG 46158 ||||| || || ||||| |||||| | || || | || || |||||||| ||| Sbjct 8267 TTACAGTGGGATGTGGGATGGCAGCTTCAAGATTGCCTGGAGTAATAACCCGGCGTGGAT 8208 Query 46159 CCTGTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGG-GCGGCGG 46217 | | | || || ||| || ||| || ||| | || |||||||||||| | || Sbjct 8207 CTTCTACGATCTGGTGATGAACGAGCGTTATGGCCTAGGGAAACGCCTGGGGAGTTTTGG 8148 Query 46218 ATGTGGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATG 46277 |||| |||||||||| ||||| ||||||||| || ||||| ||||||| || | Sbjct 8147 CTGTG-ACAAGTGGGCCATGTATAGCATTGCGCAATATTGCGATGTGATGGTCGACGACG 8089 Query 46278 GTTTCGGGGGCACAGAGCCGCGGATGACCTTTAA-TGCGTACCTGTCAC--AACAGCGTA 46334 | ||||| || ||| ||||| ||||| | ||| ||| || | |||| | | ||| Sbjct 8088 GCTTCGGTAACAAAGAACCGCGTATGACTTGTAACTGC-TA--TATCACCGATCGTCGTC 8032 Query 46335 AGGCGTGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGT---ATGCCGGTATGGA 46391 |||||| || || | | || |||| || |||| | || ||||| || ||| Sbjct 8031 AGGCGTATGAGGTGGTGAACGA--TCTG-GCGTCGATCTTCCGTGCCATGCCAGTGTGGG 7975 Query 46392 ACGGCCAGACGCTGACGTTCGTTCAGGA-CAGCCCGTCGGATGTGGTGTGGCCGTACACC 46450 | ||| | | ||| | || ||||| | |||| | ||| ||| |||| || ||| Sbjct 7974 ATGGCATGCAGATGAGCTGTGTGCAGGATCGGCCCAGC-GATCCGGTCTGGCGTTATACC 7916 Query 46451 AACAGTGATGTGGTGGTGGATGATAACGGCGTGGGGTTTC-GCTACAGCTTCAGCGCCCT 46509 ||| | |||||||||| | ||||| | || | |||||||| Sbjct 7915 AAC---GCCAACGTGGTGGATG----------GCAGTTTCAGTTATCAATCCAGCGCCCA 7869 Query 46510 GAAGGACCGCCACACGGCGGTGGAGGTGAATTACACCGA-CCCGCAGAACGGCTGGCAGA 46568 ||||| || || ||||||| | | ||| || ||| ||||| || |||||| ||| Sbjct 7868 GAAGGCACGGCATACGGCGGCGCATGTGCGCTATGTCGATCCCGC-CAATGGCTGGAAGA 7810 Query 46569 CCTCCACGGAACTGGTGGAAGACCCGGAAGCCAT-ACTG--CGCTACGGGCGCAACCTGC 46625 || | |||||| || ||| || | || | || || ||||| | |||| | Sbjct 7809 CCGCGACGGAATACGTTTCTGAC---GATGTGATGATTGCCCGTTACGGTCTCAACGTCA 7753 Query 46626 TGAAGATGGATGCGTTCGGTTGCACCAGTCGCGGTCAGGCCCACCGTGCCGGGCTGTGGG 46685 |||| ||||| ||||| || ||| ||||||||||||| || |||| | |||| Sbjct 7752 CCGAGATCGATGCCTTCGGCTGTACCTCGCGCGGTCAGGCCCGTCGCACCGGCCAGTGGA 7693 Query 46686 TGATAAAGACCGGACTGCTGGAAACGCAGACGGTGGATTTCACGCTCGGGTCACAGGGGC 46745 | | | |||| || |||||||| |||| |||| |||| ||||| | || Sbjct 7692 TCTTGCAAACCGAACGGCTGGAAAAGCAGTCGGTCAGCTTCAATGTCGGGCGCGAAGGCA 7633 Query 46746 TGCGTCACACACCCGGTGACATTATTGAAATCTGTGATAACGACTATGCC 46795 || || || || || || ||||||||| ||||||| | ||| || Sbjct 7632 TGAAACATCTGCCAGGGGATATCATTGAAATCGTTGATAACCAGTATACC 7583 >seq736 Length=144232 Score = 104 bits (114), Expect = 8e-18 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 114 GCTGACCTGCACGCCGTTGTCGATCCAGCGTTTGATCTCGCGGATCCGGTCAATATCGGC 173 ||||||| | || ||| |||||||| || || |||||| ||| ||| |||| | Sbjct 118029 GCTGACCGGTACACCGCGCTCGATCCAACGCAGAATACTGCGGATGCGGGCAACATCGTC 118088 Query 174 ATCGTTGAACAGCCGATGACCGCCGTCTGTCCGTTGCGGTTTCAGCAATCCGTAACGCCT 233 ||| | ||| ||||||| || || || | |||||||||||||||| || ||||||| Sbjct 118089 ATCATCGAATTGCCGATGGCCACCTTCGCTGCGTTGCGGTTTCAGCAGGCCATAACGCCG 118148 Query 234 CTGCCACGCGCGTAACGTGACAGGG 258 |||||| |||||||| ||||| ||| Sbjct 118149 CTGCCAAGCGCGTAAGGTGACTGGG 118173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175535683538772