Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028484.1 Length=11343 Score E Sequences producing significant alignments: (Bits) Value seq15 141 7e-30 seq169 91.5 1e-14 seq97 78.8 7e-11 >seq15 Length=2181291 Score = 141 bits (156), Expect = 7e-30 Identities = 250/363 (69%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 6828 CAATTTCCAAAGATATGAATCAACAGCTCCTGTTTTCCGGGTGATTGGACAATTTTTTGG 6887 ||| ||||| |||||||||| || || || ||||| || || | ||||| || ||||| Sbjct 562602 CAACTTCCAGTGATATGAATCCACCGCACCGGTTTTTCGTGTACTCGGACAGTTCTTTGG 562543 Query 6888 TCTACCGAAC---TTA---TTTGTGCGAACGCATGAATTCTTTGAAAAAGCACTGGTGTA 6941 |||| ||| ||| || ||| | || ||||| |||||| || | | || | || Sbjct 562542 ATTACCAAACCTGTTAGTGTTCGTGAGGACTCATGAGTTCTTTCAACGATCTTTGATCTA 562483 Query 6942 CTATCGAGACAGACCTGACCTGATGAAGGTCGTGGACGATCAAGTGTACAATAGGGATGA 7001 ||||||||| | || || || ||| || | |||| |||| || || || Sbjct 562482 TTATCGAGACCGCCCAGATCTCATGCGCGTTGAAGACGGCATAGTGGTGAACAGAGACCC 562423 Query 7002 TACGAAGAGGGTTAGCTGGAATGGTCAAAAAGGAGGCTTGGAAGGTCTTCGCCAAAAAGG 7061 | ||||| | | ||||||| || || || || || || | || || |||||||| Sbjct 562422 GAGTAAGAGAGCTTGCTGGAAAGGACAGTTCGGGGGATTAGAGGAACTACGACAAAAAGG 562363 Query 7062 ATGGAGTGTATTGAATCTTTTAGTGATTGAACGAGAATCTCGTATCCGAAACACCGAAAT 7121 ||||||||| | || ||| | || || ||| ||||||| | || |||| || | Sbjct 562362 ATGGAGTGTCCTCAACCTTCTCGTTATAGAAAGAGAATCATGGATTAGAAATACTCTTGT 562303 Query 7122 AAAAACGCTGGCTCAAGGAGACAATCAAGTGATTTGCACTCAATATGCCATAAATCCGTC 7181 | | || |||||||||||||||||||| ||||| || |||||| | |||||||| || Sbjct 562302 ATAGACTTAAGCTCAAGGAGACAATCAAGTCATTTGTACACAATATACAATAAATCCATC 562243 Query 7182 CAA 7184 || Sbjct 562242 TAA 562240 >seq169 Length=2860138 Score = 91.5 bits (100), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 6691 CCACTATTCAAAGGATTGACCATGGCGGATGATCAAACGACTTTGATCAAGAAGATGATT 6750 || || || || ||| | || |||||||| |||||||||||||| || ||| ||| | Sbjct 931029 CCCCTTTTTAAGGGACTCACAATGGCGGACGATCAAACGACTTTAATTCGGAAAATGCTA 930970 Query 6751 CAGAACACAAGTGGACAAGGAGGAAATGATTACAAGCATATAACGTTTGCGAATCACATC 6810 |||| || |||||||| ||| | |||| | || | || | |||||||| ||| Sbjct 930969 GAGAATACGCA-GGACAAGGCGGATCTAATTATGATCACGTTACAATCGCGAATCATATC 930911 Query 6811 GATTACGAAAAGTGGAACAATTTCCAAAGATATGA 6845 |||||||| || |||||||| || || || ||||| Sbjct 930910 GATTACGAGAAATGGAACAAATTTCAGAGGTATGA 930876 >seq97 Length=1866282 Score = 78.8 bits (86), Expect = 7e-11 Identities = 98/132 (74%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 852 TGGATTTGGACTAGCCGCTGTG-CGGAGCAGTTTGTTCGGGTGACGAAGGGCGGTGAGGA 910 ||||||||||| | | ||||| | | ||| | || | || ||| || |||||||| Sbjct 1627581 TGGATTTGGACAATGC-CTGTGGCTGCGCAATATGACCAAGTAACGGTCGGGGGTGAGGA 1627523 Query 911 GATGGATAACCCACGATCTTATGCCATGTACTTCATGGATTTGGGACTGTCGTCCAAGTC 970 |||||| | || || |||||||| |||| ||| ||||||||||| ||| ||||| Sbjct 1627522 GATGGACCAACCCCGGTCTTATGCATTGTATTTCCGAGATTTGGGACTATCGGATAAGTC 1627463 Query 971 CCCCTATTCAGC 982 ||||||||| || Sbjct 1627462 CCCCTATTCCGC 1627451 Score = 78.8 bits (86), Expect = 7e-11 Identities = 98/132 (74%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 852 TGGATTTGGACTAGCCGCTGTG-CGGAGCAGTTTGTTCGGGTGACGAAGGGCGGTGAGGA 910 ||||||||||| | | ||||| | | ||| | || | || ||| || |||||||| Sbjct 1635095 TGGATTTGGACAAAGC-CTGTGGCTGCGCAATATGACCAAGTAACGGTCGGGGGTGAGGA 1635037 Query 911 GATGGATAACCCACGATCTTATGCCATGTACTTCATGGATTTGGGACTGTCGTCCAAGTC 970 |||||| | || || |||||||| |||| ||| ||||||||||| ||| ||||| Sbjct 1635036 GATGGACCAACCCCGGTCTTATGCATTGTATTTCCGAGATTTGGGACTATCGGATAAGTC 1634977 Query 971 CCCCTATTCAGC 982 ||||||||| || Sbjct 1634976 CCCCTATTCCGC 1634965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36180463653636