Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq4651 178 2e-39 seq4037 132 7e-26 >seq4651 Length=474197 Score = 178 bits (196), Expect = 2e-39 Identities = 223/300 (74%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTAT-CGGCCACGACAAAGCTG 196124 ||||| ||||| | ||||||| | | || ||| | | | ||||||| ||| | Sbjct 350333 CATGCGCCAGTACCTCGAACTCATGCGCCACGTGG-CGGAACGCGGCCACCGCAAGATGG 350275 Query 196125 ACCGTACCGGCACAGGCACTACGTC-CTATCT-CGGCGCACAGATGCGCTTCGATCTGCA 196182 |||| |||||||| ||||| | || | ||| |||| ||||||||||||||||| Sbjct 350274 ACCGCACCGGCACCGGCAC--CCTCTCGGTCTTCGGCTGGCAGATGCGCTTCGATCTCGC 350217 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 ||||| || |||||| ||||||| ||||| ||||| || || ||||| || || || Sbjct 350216 CGACGGTTTTCCGCTGCTCACCACCAAGAAGCTCCACACCCGCTCGATCATCCACGAGCT 350157 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| ||| |||||||||||| ||| || || |||||| || || || Sbjct 350156 GCTGTGGTTCCTGCGCGGCGACACCAACATCCGGTATCTCAAGGACAACAAGGTTTCGAT 350097 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||||||||| |||| ||| | ||||| ||||| ||||| ||||||||||| Sbjct 350096 CTGGGACGAGTGGGCCGACGAGAACGGCGAGCTGGGCCCGGTGTACGGCAAGCAGTGGCG 350037 >seq4037 Length=4543 Score = 132 bits (146), Expect = 7e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 196115 GACAAAGCTGACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTC 196174 ||||| | ||||| || ||||| ||||| | | | ||||| |||||||||||| Sbjct 4100 GACAAGGGCGACCGCACGGGCACGGGCACCAAGAGCGTGTTCGGCTACCAGATGCGCTTC 4159 Query 196175 GATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATT 196234 || ||| | || || || |||||||| ||||| ||||| | || ||| |||||||| Sbjct 4160 GACCTGAACGAGGGCTTTCCGCTGGTGACCACCAAGAAGGTGCACCTGAAGTCCATCATC 4219 Query 196235 CATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGT 196294 || |||||||||||||| | ||| || | ||| ||| | ||||| || ||| Sbjct 4220 GTCGAGCTGCTGTGGTTCCTTACCGGTTCCAGCGACAACAACTGGCTGAAGGAACGCGGC 4279 Query 196295 GTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAG 196354 || | |||||| ||||||||||| |||| ||| | | |||| || || ||||| | Sbjct 4280 GTGACGATCTGGGACGAGTGGGCGCGCGAAGACGGCAGCTTGGGCCCCGTCTACGGCGTG 4339 Query 196355 CAGTGGCG 196362 |||||||| Sbjct 4340 CAGTGGCG 4347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771496522160040