Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq622 93.3 6e-14 >seq622 Length=114055 Score = 93.3 bits (102), Expect = 6e-14 Identities = 343/534 (64%), Gaps = 24/534 (4%) Strand=Plus/Plus Query 162316 GAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATC--AGCCTGAAT 162373 ||||| || ||||| | ||| ||||||||||| ||||| || || |||| ||| || | Sbjct 6194 GAAATTTACAACCTGGCGGCGCAGAGTCACGTCAAGGTGTCGTTCGATCTCAGC--GAGT 6251 Query 162374 ACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTTG 162433 |||| || | ||||| |||| || | ||| |||| || ||| || | || Sbjct 6252 ACACGGCGGAAGTGGACGCCGTGGGGACATTGAGGCTGCTGGATGCCATCAGGACCTGTG 6311 Query 162434 GTATGGAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTC 162493 | |||| || || | |||| || || || ||| || || ||||| ||| Sbjct 6312 GGCTGGAGAAATCTGTCCGGTTCTATCAGGCAAGTACCTCAGAACTGTATGGAAAAGTCG 6371 Query 162494 AGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTA 162553 || ||||| ||||| || | || || | ||||||||||| || |||| || | Sbjct 6372 TTGAAACACCACAGAATGAGAAGACGCCTTTCTATCCACGATCTCCGTATGCCTGCGCCA 6431 Query 162554 AACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTA 162613 | | || || | |||||| | | ||||| ||||| || | || ||| | || Sbjct 6432 AGATGTACGGATACTGGATTGTGATCAACTATCGGGAAGCTTACAATATGTTTGCATGTA 6491 Query 162614 GCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGA 162673 |||||||| ||||||||||| | || ||||||||| ||||| || | || | Sbjct 6492 ATGGTATTCTGTTCAATCACGAGTCGCCTCGTCGAGGAGAGAATTTCGTGACCAGGAAAA 6551 Query 162674 TCGTCCGAGCCTTG---------TCCC-GAATTAGTGTGGGACTCCAAAGTGATCTACAA 162723 || |||| | || |||| |||| | | ||| | | | | | ||| Sbjct 6552 TCACCCGATCGGTGGCGAAAATATCCCTGAATCA--GATGGATTGCCTGGAGCTGGGCAA 6609 Query 162724 CTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATG 162783 ||||| ||||| | ||||||||||| || || | |||||||| || || ||| Sbjct 6610 TTTGGA---CTCAAAG-----CGTGACTGGGGTCATGCTCAGGACTACGTGGAAGCCATG 6661 Query 162784 TGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 ||| ||||| | || || |||| | || || || || || ||||| ||| Sbjct 6662 TGGATGATGTTGCAACAGCCCCAGCCTCAAGACTACGTAATTGCCACTGGCGAG 6715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691418084107320