Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_033192.1 Length=10072 Score E Sequences producing significant alignments: (Bits) Value seq401 141 6e-30 >seq401 Length=262849 Score = 141 bits (156), Expect = 6e-30 Identities = 564/870 (65%), Gaps = 22/870 (3%) Strand=Plus/Plus Query 6591 CGAATTCATGATCAAGCCTCGTCCAAAACCGGATTTGACCAAACTTGC--TAACAGCACT 6648 |||||||||||| || || | || || || ||| | |||| ||| | || | || Sbjct 113575 CGAATTCATGATTAAACCCAGACCTAAGCCTGATCTCACCA--CTTCGAGTGTCAACTCT 113632 Query 6649 TATGCCGCGTTACAAACCATAGCCTATCAACCGGGAAAGATCAACCAATTTCTCTGCCCG 6708 || || | || || ||||| || ||| |||| || |||||| ||||||| Sbjct 113633 TACGCATCCTTGCAGACCATCGCTAGTCAGAAACAAAAGTATAATCAATTTTTCTGCCCC 113692 Query 6709 TTGATAAAAGACATGAAGGAGAGAATCTTGTTCTGTCTTCGCGATAGATTCAAGATCTTT 6768 || | || || |||||||| | | ||| || | |||| | ||| ||| || Sbjct 113693 CTGTTTAAGGATTTGAAGGAGCGGGTGTTGACTTGCTTGAGCGACAAATTTTCGATTTTC 113752 Query 6769 TCCGATGTGACCATTGAGGAGTTCGCAGCTAAAGTGACAGACCTGTTTCCTGATGGGTTT 6828 || || || |||||| |||| ||||| || ||| |||| |||| || | || || Sbjct 113753 TCTGACGTCACCATTCAGGATTTCGCCGCCAAAATGACTCGTATGTTCCCGAAGGGATTC 113812 Query 6829 GATCCGAATTCGTTAA--TTTACGAATTCGACATTTCTAAGTTTGACAAGTCACAGAACG 6886 ||| | |||| || | | ||| || ||| | || |||| |||||||| ||| ||| Sbjct 113813 GATTCTC--TCGTAAAAATCTTCGAGTTTGACGTGTCCAAGTACGACAAGTCGCAGGACG 113870 Query 6887 AAATCGCTCTCATGCTAGACGCCGCGATCATGAGGATGTTCGGTATAAACGAAGAAATTG 6946 |||| || | ||| | || || || | ||| | | || || | || ||||| Sbjct 113871 AAATTGCATTGATGTTTGATGCAGCCGTAATGCGCTTCTTTGGCGTTGGTGAGGAAATAA 113930 Query 6947 TTCAGCTATGGATAAGCGG-ACA-CACCGCCACT-ACACTGGTGGATTACAAGGGGGGTC 7003 | ||| ||||| | | ||| || | ||| ||| || |||||||| | | Sbjct 113931 TCTCGCTGTGGATTAACATCACAACAGAGTCACCGACAATG-TGGATTACCATTCAAGAA 113989 Query 7004 TGAAGGCGGAGGTAACTTACCAACGCAAATCTGGCGACCCGTTCACGTTTCTCGGTAATA 7063 | ||| || ||| || ||||||||||| || || || ||||| || |||||||| Sbjct 113990 TCAAGACGAGGGTGGTCTATCAACGCAAATCCGGAGATCCTTTCACCTTCACCGGTAATA 114049 Query 7064 CTCTGTTCCTCATGTCGTGTCTGGCAGTCATCGTGCCGCTCGAGCAGATAGAGTTCGCTG 7123 | ||| ||| ||| | ||| |||| | || | || || | ||| | ||||| Sbjct 114050 CCTTGTACCTAATGGCTTGTTTGGCTATGGTCATTGATCTTGACGATGTAGTTTACGCTG 114109 Query 7124 CTTTTGGTGGTGATGA-TCAGATCATCGT-CACTAAGACCGACATTGGTCT-CAGCTCCG 7180 | ||||| |||||||| || | | | | ||| | | | | | ||| | ||| | Sbjct 114110 CGTTTGGAGGTGATGACTCCGTTATTTTTACACGCAAATCTA--TCGGTATGCAGGCCAT 114167 Query 7181 TGCAATATCTCGAGAATGTCTTCAATCTCGAGGCGAAACTTTTCGTGCGGAAATATCCGT 7240 ||||| | || || | |||||||| || | |||||| |||| || ||| | | Sbjct 114168 AAGAATATTTGAAGGATAT-TTCAATCTGGAAGTGAAACTGTTCGAACGTCAATCCGCCT 114226 Query 7241 ATTTCTGTTCGAAGTTTCTGCTACATGCA--GGAGACCGGTGGTATTTTCTACCAGACTT 7298 ||||||| || |||||| || || | || || | | ||||||||||| || || || Sbjct 114227 ATTTCTGCTCTAAGTTTTTGATA--TTCAACGGTAGCAGATGGTATTTTCTGCCCGATTT 114284 Query 7299 GCTAAAACTGGTGACCAAGCTAGGAAGACACGACCTTCGTAACGACACCCATATAGAGGA 7358 ||| || | || || || |||| ||||| | || ||||| | ||| | || || Sbjct 114285 GCTCAAGGTCGTTACGAAATTAGGCAGACATGGTCTGCGTAATCCGAAGCATGTTGAAGA 114344 Query 7359 GTACAGAGTCTCGTTGAACGACCTGTTGCAAGTGTACAGGGACAAGACAGTTTTTCCTGT 7418 ||| | || || ||| || | ||| ||||||| || || ||||| |||| || Sbjct 114345 TTACCGCGTTTCCTTGTGTGATTTATTGAGTGTGTACAATGATAAAACAGTCATTCCCGT 114404 Query 7419 CTTCAATCAGGCGTTCAATGAACGCTACCC 7448 ||||||| | || ||||||||| | || || Sbjct 114405 CTTCAATGAAGCCTTCAATGAAAGATATCC 114434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32113481314928