Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_033705.1 Length=11731 Score E Sequences producing significant alignments: (Bits) Value seq1594 116 3e-22 seq1107 87.8 1e-13 seq1774 84.2 2e-12 >seq1594 Length=5600000 Score = 116 bits (128), Expect = 3e-22 Identities = 184/262 (70%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 6709 GATTACTCCAAATGGAATAACACTCAACGAGGAAAAGCAAATAATCCTGTCTTTAAAGTT 6768 || |||||||||||||| ||| |||||||||| |||| ||| | ||||| || || || Sbjct 3582934 GACTACTCCAAATGGAACAACCATCAACGAGGAGAAGCCAATGACCCTGTGTTCAAGGTG 3582993 Query 6769 ATGGGTCAATTTTTGGGGTTGCCCAATCTCTTTGTAAGGACTCATGAATTCTTTGAGCAA 6828 ||||| ||||||||||| | || ||| | ||| | ||||| || |||||| | | Sbjct 3582994 ATGGGCCAATTTTTGGGTCTCCCAAATTTGTTTACTCGAACTCACGAGTTCTTTCGG--A 3583051 Query 6829 AGT--TTGATCTATTATAATGAAAGAACAGACTTGATGAGAGTTAGAGGAGGTGAGTTGA 6886 ||| ||||||| || || || ||| ||||| | ||||| ||| | || | | | Sbjct 3583052 AGTCCCTGATCTACTACAAAGATAGACCAGACCTCATGAGGGTTGAATCCGGGAAAGTCA 3583111 Query 6887 TACCAACGACGGATGCTAAAGTCTGTTGGAATGGTCAATTGGGAGGATTAGAGGGCCTGA 6946 || | || || || || |||||||| || ||| || || ||||||||||| Sbjct 3583112 TAAATGCAACAGAACATATCGTTTGTTGGAAGGGCCAAGCAGGCGGGCTAGAGGGCCTGC 3583171 Query 6947 GACAGAAGGGGTGGAGTGTAGT 6968 | || || || ||||| || || Sbjct 3583172 GCCAAAAAGGATGGAGCGTTGT 3583193 >seq1107 Length=3620151 Score = 87.8 bits (96), Expect = 1e-13 Identities = 190/281 (68%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 6693 ATTA-GCCAATCATTTTGATTACTCCAAATGGAATAACACTCAACGAGGAAAAGCAAATA 6751 |||| || ||||| |||||||||| || ||||||||| || |||||| | || || Sbjct 2214818 ATTACGCGAATCACCTTGATTACTCAAAGTGGAATAACCACCAGCGAGGAGAGGCGAACG 2214759 Query 6752 ATCCTGTCTTTAAAGTTATGGGTCAATTTTTGGGGTTGCCCAATCTCTTTGTAAGGACTC 6811 | || || |||| || ||||||||||| ||||| | || || || || |||| | Sbjct 2214758 ACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCACTCGGACCC 2214699 Query 6812 ATGAATTCTTTGAGCAAAGTTTGATCTATTATAATGAAAGAACAGACTTGATGAGAGTTA 6871 |||| ||||| || || | ||||||| || || | | ||| |||||||||| Sbjct 2214698 ATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGATGAGAGTGG 2214639 Query 6872 GAGGAGGTGAGTTGATACCAA--CGACGGATGCTAAAGTCTGTTGGAATGGTCAATTGGG 6929 | || || | || ||| | || || | || || ||| | || ||| || Sbjct 2214638 AATCTGGAAAGGTCAT--CAATGCCACCGAAAACATCGTTTGCTGGGAGGGCCAAGCCGG 2214581 Query 6930 AGGATTAGAGGGCCTGAGACAGAAGGGGTGGAGTGTAGTCA 6970 ||| | || || || |||||||||| |||||||| |||| Sbjct 2214580 CGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGTGGTCA 2214540 >seq1774 Length=2904822 Score = 84.2 bits (92), Expect = 2e-12 Identities = 189/281 (67%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 6693 ATTA-GCCAATCATTTTGATTACTCCAAATGGAATAACACTCAACGAGGAAAAGCAAATA 6751 |||| || ||||| | |||||||| || ||||||||| || |||||| | || || Sbjct 1686310 ATTACGCGAATCACCTGGATTACTCAAAGTGGAATAACCACCAGCGAGGAGAGGCGAACG 1686251 Query 6752 ATCCTGTCTTTAAAGTTATGGGTCAATTTTTGGGGTTGCCCAATCTCTTTGTAAGGACTC 6811 | || || |||| || ||||||||||| ||||| | || || || || |||| | Sbjct 1686250 ACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCACTCGGACCC 1686191 Query 6812 ATGAATTCTTTGAGCAAAGTTTGATCTATTATAATGAAAGAACAGACTTGATGAGAGTTA 6871 |||| ||||| || || | ||||||| || || | | ||| |||||||||| Sbjct 1686190 ATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGATGAGAGTGG 1686131 Query 6872 GAGGAGGTGAGTTGATACCAA--CGACGGATGCTAAAGTCTGTTGGAATGGTCAATTGGG 6929 | || || | || ||| | || || | || || ||| | || ||| || Sbjct 1686130 AATCTGGAAAGGTCAT--CAATGCCACCGAAAACATCGTTTGCTGGGAGGGCCAAGCCGG 1686073 Query 6930 AGGATTAGAGGGCCTGAGACAGAAGGGGTGGAGTGTAGTCA 6970 ||| | || || || |||||||||| |||||||| |||| Sbjct 1686072 CGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGTGGTCA 1686032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37422974816300