Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq429159 104 2e-17 seq432080 95.1 1e-14 seq418590 82.4 6e-11 >seq429159 Length=5605 Score = 104 bits (114), Expect = 2e-17 Identities = 159/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||| || || |||||||| || || ||| ||| || |||||||| |||| | Sbjct 3929 TGTTCAACGCTATGGAGACGATGCCATGTGTCAAGAAGAAGGCCGATTGGGCGCTCAAGT 3870 Query 61457 GGATC----ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 ||||| || ||| | || | || || || ||| | | || ||||| | ||| Sbjct 3869 GGATCTGTCACGAGT----CTGCATCTTTCGGCGAGCGAATCATCGCCTTTGCCGCTGTC 3814 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | || ||| ||| ||||| || || || ||| ||||||| || || ||| Sbjct 3813 GAGGGGATTTTCTTCTCTGGTAGTTTTGCTGCCATTTTCTGGCTGAAGAAGCGAGGGCTT 3754 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||||| || |||| ||||||||||| |||| ||||| || |||| Sbjct 3753 ATGCCAGGCTTGACTTTCAGCAATGAACTGATTTCACGTGATGAGG 3708 Score = 102 bits (112), Expect = 6e-17 Identities = 117/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 61015 GACAC-CAGCAATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCAT 61073 ||||| |||| | || || ||| | | || ||||| || || |||||| | |||||||| Sbjct 4568 GACACGCAGCTA-GAGCCTCTACTTCGCGAAAATCCACGACGCTTCGTAGTTTTCCCCAT 4510 Query 61074 CGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGA 61133 | |||| | || || |||| ||||| ||||| || || || ||||||||||||| || Sbjct 4509 CCAGTACCATGACATCTGGCATATGTATAAAAAAGCTGAGGCCTCCTTCTGGACGGCTGA 4450 Query 61134 GGAGGTCGATTTGTCCAAAGACATGAATGACTGGG 61168 || || ||||||||||| || ||| ||| |||| Sbjct 4449 AGAAGTTGATTTGTCCAAGGATATGGCTGATTGGG 4415 >seq432080 Length=12955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| || || |||||||| ||||| | ||| || || | || |||||| || ||| Sbjct 11918 GCAACTGACGCCAGGTTGCACACAGCGACCTCTTCGGGTGAAGTGAACTCGATGATCTCG 11859 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 |||||||| ||||||||||| || ||||| | ||||| || || ||||| |||||| Sbjct 11858 GTGCACAGGTTACTGCAGCGGATTGTGCCGAGGTTCTGCTGGTTGGACTTGCTGTTGCAT 11799 Query 66128 GCATCCT 66134 ||||||| Sbjct 11798 GCATCCT 11792 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || ||||||||| ||||||| || || || || || |||||| | Sbjct 11189 CATGAACAGGTCTGGGATCCAGAGGCCGTAGAAAAGGTCACGGGCACGGACCTCCTCCTT 11130 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| ||| || | |||||||||||| ||||||||||| ||||| || || ||||| Sbjct 11129 ACCGGTATTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTA 11070 Query 66460 GATGGCGAACGAGCCC 66475 || || |||| |||| Sbjct 11069 CATAGCAAACGCGCCC 11054 >seq418590 Length=2458 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || ||||||||||| | ||| | ||||| ||||| || | ||||||||||| || ||| Sbjct 1713 TCCACCGTGAACTGCAGCGCCTGCGCAGCGGCCTTTGTACGGAGATAGTACATCCCAGTC 1654 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGA 65172 ||||| || | |||||| |||| ||| ||||| || Sbjct 1653 TTGAGTCCGGAACGCCACGCATGGAAGTGCATGGA 1619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395472425408240