Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_033313.1 Length=1789 Score E Sequences producing significant alignments: (Bits) Value seq415535 141 1e-30 seq134000 132 5e-28 seq133999 129 7e-27 seq398035 104 3e-19 >seq415535 Length=2156 Score = 141 bits (156), Expect = 1e-30 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 539 ATGGTATGCAATCGAAAGATCAGAGGACGTCACTTTACCAGATGTGGCATGTTACGCACG 598 ||||||||| || || ||| || |||| | |||| ||||| || | | ||||| | Sbjct 1941 ATGGTATGCCATAGAGAGACACGAAAACGTAATACTACCGGATGTAGCGTATAACGCAAG 2000 Query 599 AGCTCAAATTTGCAGTAGAGATAAAAATAAAATTAGAGCTACTTGGGGTTACCCGTTGTC 658 ||| |||||||| ||||||||||| || || || |||| || |||||||||||| || | Sbjct 2001 AGCACAAATTTGTAGTAGAGATAAGAACAAGATACGAGCCACATGGGGTTACCCGCTGAC 2060 Query 659 AGTATTTCTGACAGAAGCTCAATATTTCTATCCTATACTGAAAGAGCTAAAACAGCGAGA 718 ||| | ||||||||||| || ||||| |||||| | || ||| ||||| | || Sbjct 2061 AGTTTATCTGACAGAAGGCCAGTATTTTTATCCTTTGCTTGAAGCTCTAAAGAACCGCTC 2120 Query 719 TAAGCCAAAGATAGCTTATGGAGTTGAAATTGGAAC 754 ||||| || |||| || ||| | ||||||||||| Sbjct 2121 GAAGCCCAAAGTAGCATACGGAATAGAAATTGGAAC 2156 >seq134000 Length=272 Score = 132 bits (146), Expect = 5e-28 Identities = 132/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 539 ATGGTATGCAATCGAAAGATCAGAGGACGTCACTTTACCAGATGTGGCATGTTACGCACG 598 ||||||||| || || ||| || |||| | |||| ||||| || ||||||||| | Sbjct 86 ATGGTATGCCATAGAGAGACACGAAAACGTAATACTACCGGATGTAGCGTGTTACGCAAG 145 Query 599 AGCTCAAATTTGCAGTAGAGATAAAAATAAAATTAGAGCTACTTGGGGTTACCCGTTGTC 658 ||| |||||||| || |||||||| || || || |||| || |||||||||||| || | Sbjct 146 AGCACAAATTTGTAGCAGAGATAATAACAAGATACGAGCCACATGGGGTTACCCGCTGAC 205 Query 659 AGTATTTCTGACAGAAGCTCAATATTTCTATCCTATACTGAAAGAGCTAAA 709 ||| ||||||||||||| || ||||| |||||| | || ||| ||||| Sbjct 206 AGTTTTTCTGACAGAAGGCCAGTATTTTTATCCTGTGCTTGAAGCTCTAAA 256 >seq133999 Length=272 Score = 129 bits (142), Expect = 7e-27 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 539 ATGGTATGCAATCGAAAGATCAGAGGACGTCACTTTACCAGATGTGGCATGTTACGCACG 598 ||||||||| || || ||| || |||| | |||| ||||| || ||||||||| | Sbjct 86 ATGGTATGCCATAGAGAGACACGAAAACGTAATACTACCGGATGTAGCGTGTTACGCAAG 145 Query 599 AGCTCAAATTTGCAGTAGAGATAAAAATAAAATTAGAGCTACTTGGGGTTACCCGTTGTC 658 ||| |||||||| || |||||||| || || || |||| || |||||||||||| || | Sbjct 146 AGCACAAATTTGTAGCAGAGATAAGAACAAGATACGAGCCACATGGGGTTACCCGCTGAC 205 Query 659 AGTATTTCTGACAGAAGCTCAATATTTCTATCCTATACTGAAAGAGCTAAA 709 ||| | ||||||||||| || ||||| |||||| | || ||| ||||| Sbjct 206 AGTTTATCTGACAGAAGGCCAGTATTTTTATCCTGTGCTTGAAGCTCTAAA 256 >seq398035 Length=1322 Score = 104 bits (114), Expect = 3e-19 Identities = 353/546 (65%), Gaps = 8/546 (1%) Strand=Plus/Plus Query 723 CCAAAGATAGCTTATGGAGTTGAAATTGGAACAGGAGGCATGGGCTTCTTAAACGAGATG 782 |||||| |||| || ||| | ||||||||||||||||| ||| |||| | || || ||| Sbjct 4 CCAAAG-TAGCATACGGAATAGAAATTGGAACAGGAGGAATGAACTTCATTAATGAAATG 62 Query 783 GCGTCTTATTATAAAACTAACAATTTCCTGATTGGTGATTGGAGAAAATTTGATAAGACA 842 ||| | | | | || | ||||||||||| || ||||||||| || ||| Sbjct 63 GCGAAACAAGAGTCAGTGAGAAACTATCTGATTGGTGACCGGTCAAAATTTGACAAAACA 122 Query 843 ATTCCAGCTTGGTTAATAAGAGATGCTTTCAGAATGATCATGCGACACATAGATCTAACC 902 | ||||| |||||||| | || || || | |||| | | |||||||| | | Sbjct 123 GTCCCAGCATGGTTAATTCGCGACGCCTTTAAAATGTTACTAAGACACATAAACACAGAG 182 Query 903 AAAGTTCAATCAACTGGTGGAAGAATATGGCCAGTTAGAGCTTCAAAGACGAAGAAGCG- 961 |||| | | | | || | ||||| ||| || || ||||| | || Sbjct 183 CAAGTGATGTGTGCAGACAGCCGAGTGTGGCCCGTTCGAAAATCGAAGACATTGGTTCGA 242 Query 962 --CCTCGCAAAATTAATCAATTATTTTATAGATACACCAGTACAATTAAGTAGTGGCGAG 1019 || || ||| | || |||||||||||||| ||| | || |||||| || | Sbjct 243 TACCATGCG---TTAGTAAAGTATTTTATAGATACGCCAATTCAGGTAAGTACCGGAATG 299 Query 1020 CGATTTGTAAAACATGGCGGTGTACCATCAGGTTCATCGTTCACTAATCTGATAGATGGA 1079 |||| || || || || ||||| |||| | | || | ||||| || | |||| ||| Sbjct 300 AGATTCGTCAAGCACGGAGGTGTGCCATTAAGATCCTGCTTCACAAACTTAGTAGACGGA 359 Query 1080 ATAGTTAACGCAATTGTTACTAGATATACAGTGTATTCAATGACGGGAGAACTCCCGTAT 1139 || | || ||| | || || || ||| |||||| ||||| | | || | | || Sbjct 360 ATTATAAATGCATTAGTCACGAGGTATGTCGTGTATATCATGACTGAACAATTAACCAAT 419 Query 1140 -GATGACTTATACCTAGGTGACGATATAGTTGCTGTAACAAAGAAGCCATTGGATCTGCA 1198 || ||| |||| ||||| | || | | || | || |||| ||| | ||||| | Sbjct 420 AGACGACGTATATTTAGGTAATGACTTCTTCGCAATCACGGAGAAACCACTAGATCTTGA 479 Query 1199 TTTATTTGCAGAAATAGCTGAAAAGCAATTTTCAATGATCTTCAATCCAGATAAAAGTTA 1258 | || || |||||||| |||| ||||||||| || || | || ||||| | Sbjct 480 AATGTTCGCTAAAATAGCTCTGGAGCAGTTTTCAATGCGTTTTAACGCTGAGAAAAGCTG 539 Query 1259 TCAAAC 1264 ||||| Sbjct 540 CCAAAC 545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5590193262030