Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1251 282 3e-71 seq1346 123 2e-23 >seq1251 Length=5235866 Score = 282 bits (312), Expect = 3e-71 Identities = 1120/1761 (64%), Gaps = 35/1761 (2%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || || || || || ||||| || || | ||| || | ||||| ||||| || || Sbjct 3096374 ATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCCAGT 3096315 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||||| || ||||||||| || || || || | || |||| ||||||| ||||| Sbjct 3096314 TTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGGCTC 3096255 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || ||||| ||||| || ||||| || ||||| ||| | ||| | ||||| ||||| Sbjct 3096254 AGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGCCAT 3096195 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 | |||| || | || |||||||| || || ||||||| | | || || | Sbjct 3096194 TTGAATGGTAGTTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTATATCTTT 3096135 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 ||||| ||||| | || | ||| ||| | ||||||| |||| ||| Sbjct 3096134 GGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTCATATC 3096075 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || ||| | | || | | || | | |||||| |||||| |||||||| Sbjct 3096074 TTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACTTGGAA 3096015 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 || || || | |||||| | || || || || |||| || ||||| |||||| | Sbjct 3096014 TTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAGATTCATT 3095955 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 ||| || || ||||| || || || ||||| ||||| ||||| || | | ||| || || Sbjct 3095954 GTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTGAATTGCG 3095895 Query 65557 CAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTC 65616 | ||| | || |||| |||| |||| | | ||||| ||| | ||| | | | Sbjct 3095894 AAGTCCATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGA--GGTCTGTTGGA 3095837 Query 65617 GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAA 65676 | | | |||||| || | ||| | | || |||| | || ||| | | Sbjct 3095836 GTTTT----GTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATGATA 3095781 Query 65677 ACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATA 65736 | || ||||| || | | | || | || ||| || | ||| | || | |||| Sbjct 3095780 TGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAATA 3095721 Query 65737 AATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC 65796 ||| || || || || || | || |||| || || || || || || || | Sbjct 3095720 AATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCACTTTCATATGGTATGCG 3095661 Query 65797 CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAA 65856 ||| | ||||| || || || | ||||| || || || || || || | || | || Sbjct 3095660 CATTAATACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTGCCTCAT 3095601 Query 65857 ATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATT 65916 ||| || | || ||||| || || |||||||||| ||| ||||| ||| | ||| Sbjct 3095600 ATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATTTAGATT 3095541 Query 65917 GCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATC 65976 | || || | | |||| || || | |||| | | | Sbjct 3095540 CTGGGTAACTATCT----------------TTGT--GACCTCTTTAAGTTTGGTAAAGTT 3095499 Query 65977 GGGAGTGCCGGACAC---CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGC 66033 | ||| | | ||||||| || | |||| |||||| | ||| || || || Sbjct 3095498 GTAAGTTTTGTCATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGC 3095439 Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 | | || || | || |||||||| |||||||| ||||||| || || || || || Sbjct 3095438 TGTTTCATCTGCAGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGT 3095379 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||| | ||| | ||||||||||| | ||| || ||||||||||| | ||| || || || Sbjct 3095378 GCCTAGATTTTTCTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGT 3095319 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC-GT-- 66210 || || || ||||| | ||||| || || | ||| || |||| || || || Sbjct 3095318 TCCAGTTTCTACTTGTGCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGACTTGTTT 3095259 Query 66211 -ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCC 66269 || || || | ||| |||| || | ||| || | || || |||||||| Sbjct 3095258 CACATAACGTTTTTCCT----GTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCC 3095203 Query 66270 ATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTT 66329 | |||| | || |||| | | || || ||||| | |||||| ||| | || Sbjct 3095202 AGCAATCGGCTAAACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTT 3095143 Query 66330 CTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTT 66389 | ||||| |||||||| ||| || ||||| || || || ||||| || | ||| ||| Sbjct 3095142 CAACACGTTTCATAAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTA 3095083 Query 66390 GCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATG 66449 ||||| | || ||||| || || || || ||||| || || || |||||||| | Sbjct 3095082 CTTCCTCTTTACCATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGG 3095023 Query 66450 GTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAG 66509 |||| | || | ||||| | |||| ||||| ||| |||||||| || || | | Sbjct 3095022 GTTCTAAATACACTGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGG 3094963 Query 66510 CGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGT 66569 | || ||| | ||||||||||| || || | || || || ||||| || || Sbjct 3094962 CAGTGTTATTGTAAACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAG 3094903 Query 66570 CGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCT 66629 | ||| || ||| || | || ||| |||| | |||||||||||| || | | Sbjct 3094902 CAATGTAGGTGCCTTTGGCTCTAATGCAGTGCACATGAACACCAATACCACCAGCTGATT 3094843 Query 66630 TCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGA 66689 | ||||| |||||| | || || |||| || |||||| |||| | | | Sbjct 3094842 TAGAGATCAAAGCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCA 3094783 Query 66690 TGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGG 66749 | | | || | |||||| | || ||| | || ||||| || | || || || | Sbjct 3094782 TAGCAACAAGAAAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTG 3094723 Query 66750 GTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAA 66809 | | || || || || || | ||| | ||||||| |||| ||| | ||||||| Sbjct 3094722 GACTCGCATGAGTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAA 3094663 Query 66810 TGTTTTCGCCATGAATCCCGA 66830 | ||| ||||| || |||| Sbjct 3094662 CATCTTCACCATGTATTCCGA 3094642 >seq1346 Length=947742 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 |||| ||||||||| ||||||||| | || || || || || || || || || |||||| Sbjct 446443 GAACGACATTTCATCAAACATGTGCTTGCATTTTTCGCAGCGTCAGATGGAATAGTCAAT 446384 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305 || || || | ||| | ||| | || ||||| |||||| | || || | | ||| || Sbjct 446383 GAAAACCTAGTAGAAAGATTCTCACAAGAGGTCCAAGTGACAGAAGCTAGATTTTTTTAT 446324 Query 61306 GGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACG 61365 || ||||||||||| ||||| ||||| || || ||||||||| | || || || || Sbjct 446323 GGGTTCCAGATTGCTATGGAAAATGTACATTCTGAGATGTACTCCTTACTTATTGACACA 446264 Query 61366 TACATCAGGGA 61376 || |||||||| Sbjct 446263 TATATCAGGGA 446253 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||||||||| ||||| | || |||||| ||| || || ||||| || | | Sbjct 445289 TGTTCAATGCCATTGAGACCCTGCCCTGCGTGAAGAAGAAGGCCGACTGGGCATTGCAGT 445230 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||||| |||| | || || |||||||| |||||| | |||| ||||| | ||||| | Sbjct 445229 GGATCGCCAGCAAGACTGCCACATTTGGAGAACGAATTGTGGCTTTTGCAGCAGTCGAAG 445170 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || ||| || || || | ||||| ||| ||||||| | || || |||| Sbjct 445169 GCATCTTCTTCTCGGGCAGTTTCGCTTCCATCTTCTGGCTGAAGAAGAGGGGGCTCATGC 445110 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 | || || || ||||||||||| |||| || | || |||| Sbjct 445109 CTGGGCTTACTTTCAGCAATGAACTGATTTCTAGAGATGAGG 445068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397532624026640