Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq1802 197 1e-46 >seq1802 Length=132586 Score = 197 bits (218), Expect = 1e-46 Identities = 965/1507 (64%), Gaps = 45/1507 (3%) Strand=Plus/Minus Query 7477 TCCTGGTGTATTACAGTTCATTCAGGCATTGGGGACATCCCTTTATAGATACACTCGCCG 7536 || || ||| |||| | ||||| || |||||||| ||||| ||| | || || | Sbjct 31603 TCTTGTTGT-TTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAAG 31545 Query 7537 GATTAGAGAAGTTATA----CACACAAGTTACATGCGAAAAAGATATTGATGAATCTTAT 7592 || | | |||||| | || |||| || | | |||| ||| |||| | ||| Sbjct 31544 GACTCAAAAAGTTACATGAACAAACAACTTTAAAG--AAAACGAT--TGATCGAAGATAT 31489 Query 7593 GCCGAAATGTTAGCAAGTGACTTAGCTTATATTGTACTTGAAGAC-CAATTCAAGaaaaa 7651 || | ||||||||||||||||| ||||||| ||||||| |||||| | ||||| Sbjct 31488 GCGCAGGCATTAGCAAGTGACTTAGCACATATTGTG-TTGAAGAATCAATTCGACAAAAA 31430 Query 7652 gaaaaaaTGGTTTGTCAACTTGGAAGAACTCCCACGAGACCATCACTTGTATCCCTTTGT 7711 ||| | |||| || | | | | | | ||| || | | ||| || | Sbjct 31429 GAAGATTTGGTCAGTTGAAACCAATCTATTGCGAAAAGATCACCCTCTATATGACTCAAT 31370 Query 7712 CAAATCACAA-ACCTGGCCTACTGCCAATATTATTGAG-GATTTTGGAGACAATTGGCAT 7769 | ||| || || ||||||||| ||| | | || || ||||| || | |||||| Sbjct 31369 TAC-TCAAAATACATGGCCTACT-CCATTTCAGATCAGAGACTTTGGGGATCAATGGCAT 31312 Query 7770 AAACTCCCATTGATTAAGGCGTTTGAGATCCCTGATGTTATAGATCCTTCCATTATATAT 7829 | || || |||| ||| ||||||||||| ||||| || |||||| | || ||| Sbjct 31311 ACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTAT 31252 Query 7830 TCCGATAGAAGTCATTCAATGAATAGAAGTGAGATTATCAACCATTTAAACAAGAATCCC 7889 | |||| ||| |||||||| | | | | ||| | | ||| ||| || |||| Sbjct 31251 GCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATATCCG 31192 Query 7890 ACAAAACCAATTCCCACaaaaaaaGTGTTAAAAACCTTATTGAGTGAACCCGCTACTGAC 7949 | | || || || |||| || || || | || || | | ||||| || || Sbjct 31191 AATATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAACAGAA 31132 Query 7950 TGGAAAGAATTTTTAAAAGCAATTAATGATGTCGGATTATCCTGGGATGATTTGGTCATC 8009 |||||| ||||| |||| | |||||| || ||| | ||| || | || ||| Sbjct 31131 TGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTATC 31072 Query 8010 GGACTGAAAGAAAAGGAGCGGGAATTGAAAACAGCAGGACGTTTCTTTTCATTAATGTCT 8069 ||| | | |||||||| || | |||| | ||| | || ||| | | ||||| Sbjct 31071 GGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCC 31012 Query 8070 TGGAAGCTGAGAGAATATTTTGTAATAACTGAATATCTCATAAAAACCTTTTATGTCCCT 8129 ||||| | ||||| ||||| |||||||| ||||| | || ||| || ||| || Sbjct 31011 TGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCA 30954 Query 8130 CTTTTTTATGGATTAACAATGGCTGATGACTTAGTTACTGTTATGAGAAAAATGCTCGAA 8189 | |||| ||||| || ||||| |||||| | |||||| | | || ||| | || Sbjct 30953 TTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGAT 30894 Query 8190 ACATCATCTGGACAAGGATTGGATAATTATGATGTGAT--CTATTTGGCCAATCACATCG 8247 || || ||| ||||| || ||| ||||| || | ||| || ||||| || Sbjct 30893 ACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATT--GCTAATCATATTA 30836 Query 8248 ATTATGAGAAATGGAATAACCACCAACGACAAGCCTCGACTGGTCCTGTATTTAAGGTGA 8307 ||||||| || ||||| || || ||| || | | ||| |||||| || | || | Sbjct 30835 ATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCA 30776 Query 8308 TGGGACAATTCTTGGGTTACCCTAATTTAATTTACAGAACACACGAATTTTTTGAGAAAA 8367 |||||||||| || || || |||||||| || | |||| || ||||| || | | Sbjct 30775 TGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATCGA 30716 Query 8368 GCCTGATTTATTATGGATATTATCCAGAATTATTGAGTGTTGTAAATGGGGAAGTTGCAA 8427 | | |||||||| || || || || ||| ||| || | | | | || Sbjct 30715 GTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTCGTTTAGAAA 30656 Query 8428 ATA---ATTCTGATAAACGAGTGTGCTGGAATGGCCAGGCAGGAGGGCTGGAAGGGTTAC 8484 | | | || || | || ||||||||||| || |||||||| || || ||| | Sbjct 30655 ACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGA 30596 Query 8485 GTCAGAAGGGATGGAGCAT--TTTAAACTTATTGGTAATTAGGAGAGAAGG---AGCTCA 8539 | || || ||||| || || |||| ||| | |||| |||||||| || | | Sbjct 30595 GACAAAAAGGATGAAGTATCGTTTA---TTA-TAAACATTAAAAGAGAAGGTAAAGTTGA 30540 Query 8540 TCGAAATACACAAGTGAG-ATGTCTAGCTCAAGGAGACAATCAGGTTATCTGCACCTTAT 8598 |||||| | | || || | | || |||||||| ||||| ||| |||| || || Sbjct 30539 ---AAATACGAGACTTAGTATCT-TGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAAT 30484 Query 8599 ACAAACTTCAGAA-ATATCGAACACAAGAGGAACTCCAAGAAAACATCCAGCGGGTGGTT 8657 | ||||| ||||| ||| ||| || | ||||| | ||| ||||| | | | Sbjct 30483 ATAAACTGCAGAAGATA-CGATCAAGCAATGAACTAGATGAATGTATCCAAAGAATTATA 30425 Query 8658 GATAATAATAATGTGATATTAAATAGAATTATCAAAGGAACTGAGAGATTAGGATTGATT 8717 || || ||| ||| | | || || ||||||||| | || | |||||| | Sbjct 30424 TCAAACAACAATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTA 30365 Query 8718 ATAAATAGAGATGAAACAATGCAAAGT--GCTGATTACCTGAATTATGGCAAGATTCCCT 8775 || ||| ||||||||| ||| |||| || ||||| |||||||||| ||| |||| Sbjct 30364 ATTAATCAAGATGAAACCATG--AAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGA 30307 Query 8776 TCTTTAGGGGGAATTTGAGAAATCTTGAAACCAAACGATGGTCTAGAGTCACTTGCGTCA 8835 | ||| | ||||| | | | | ||| | ||| ||||||| |||| | || | Sbjct 30306 TTTTTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCATGTATGT 30248 Query 8836 CCAATGATCAAATTCCAACTTTGGCAAACGTGATGTCTTCAGTTACAACAAATGCATTAA 8895 | || |||||| | || || | || | || ||| || | | || |||||| Sbjct 30247 CTAACGATCAATTACCTACAATAAGTAATATAATCTCTATGGTATCTTCTAACGCATTAT 30188 Query 8896 CAGTGGCCCATTATTCAGACAATCCTCTAAACACAATATTTCATTTTAATTTCCTCGGGA 8955 | || | || | |||||| |||| | | |||| | |||| |||||| || || | Sbjct 30187 CTGTAGGGCACTTTTCAGAATCTCCTTTGGATTCAATTATCCATTATAATTTTCTAGGAA 30128 Query 8956 ATTTTGT 8962 |||| || Sbjct 30127 ATTTAGT 30121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41481392594096