Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_033703.1 Length=9314 Score E Sequences producing significant alignments: (Bits) Value seq1802 156 3e-34 >seq1802 Length=132586 Score = 156 bits (172), Expect = 3e-34 Identities = 551/854 (65%), Gaps = 29/854 (3%) Strand=Plus/Minus Query 4001 TGGCATCGACTTCCCCTTATACAATGTTATGAGATCCCTTATGGGATCGACCCGGCCGTT 4060 |||||| ||||| | | | | |||| ||||||||| ||| |||||| || | Sbjct 31317 TGGCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTA 31258 Query 4061 CTTTATGCAGACAAAAGCCATTCTATGGATTTGTCCGATATTATATCACACATTTCGAAT 4120 | ||||| || ||||||||||| || || || | ||| || || | || Sbjct 31257 ATCTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAA 31198 Query 4121 AGTCCGTATAAACCTATACCATCAAAGAAAGTTCTCAGGACAGCTTTATATACT---CCG 4177 |||| ||| || || || |||||||| || || ||| ||||| || ||| Sbjct 31197 TATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACT--TTTATCAACAGTCCCG 31140 Query 4178 GGAGTGAATGTAAGAGAATTCCTATCAGAAA----TCAATGAGAACGGATTATCAAAGGA 4233 | ||||| || | ||| | |||| ||||||| | || ||| ||| Sbjct 31139 CAACAGAATGGAAAA-----CCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGA 31085 Query 4234 AGACCTTGTGATTGGTTTGAAAGGGAAGGAGAGAGAGGTTAAGAGAACGGGACGATATTT 4293 | | ||||| || || || ||||||||| || | |||| |||| || ||| ||| Sbjct 31084 ATATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTT 31025 Query 4294 CTCACTCATGAGTTGGAATCTAAGACTGTATTTTGTCATCACAGAGTATTTAATCAAGAA 4353 | || ||| ||||| ||||| ||||| || || ||| ||||| || || Sbjct 31024 TGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAACAA--TATTTGATTAAAGT 30967 Query 4354 ATATTATGTACCACTTTTTTCCGGGTTGACTATGGCTGACAGTTTTAATATGGTTATGAG 4413 ||| ||| ||| | ||||| || ||||||||||| || |||||| || | | Sbjct 30966 GCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAA 30907 Query 4414 AAAACTGATCGATCGTACATCTGGGCAAGGAGAGAAAGGATATGAAAGAATCACTTTTGC 4473 || || | ||| | | ||| ||||| | ||||||||| || || |||| Sbjct 30906 GAAGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGC 30847 Query 4474 AAATCACTTCGATTATTCAAAATGGAACAACACACAAAGAGGGAAAGCAAATAATCCAGT 4533 ||||| | ||||| ||| |||||||| ||||||| |||| || ||||| || Sbjct 30846 TAATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGT 30787 Query 4534 GTTCCGAGTTATGGGGAAATTCTTGGGGCTCCCAAATATCATCTCAAGAACTCATGAGTT 4593 ||| ||| ||||| |||| || ||| || ||| | ||||| |||| ||||| || Sbjct 30786 TTTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATT 30727 Query 4594 CTTCGAGAGGAGCTGGATTTACTACAATGACAGATCGGATTTGATGGAACTAGTTGAAGG 4653 |||| | ||| | ||||| ||||| | ||| | ||| | ||| | | | |||| Sbjct 30726 CTTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGC 30667 Query 4654 TGAAATCCGCAACCGAACCACCCA--AAGA--GTTTGCTGGAATGGGCAACTGGGGGGAC 4709 | | | || | || || | |||| |||||||||||||| ||| || |||| Sbjct 30666 T-CGTTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGAC 30608 Query 4710 TTGAAGGGCTAAGACAAAAAGGATGGAGTGTGGTAAGCCTACTTGTA---ATTGAACGTG 4766 | || ||||| |||||||||||||| ||| | || | || || ||| || | | Sbjct 30607 TAGAGGGGCTGAGACAAAAAGGATGAAGTATCGT-----TTATTATAAACATTAAAAGAG 30553 Query 4767 AAGGCAAAATACGAAACACAAAAATCAAAATACTCGCACAGGGGGACAATCAAGTTGTTT 4826 |||| ||| | ||| || | | | | || | || || || || ||||||||||| | Sbjct 30552 AAGGTAAAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCT 30493 Query 4827 GCACCTCATATAAA 4840 | || ||||||| Sbjct 30492 GTACTCAATATAAA 30479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29687161407592