Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_033703.1
Length=9314
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 156 3e-34
>seq1802
Length=132586
Score = 156 bits (172), Expect = 3e-34
Identities = 551/854 (65%), Gaps = 29/854 (3%)
Strand=Plus/Minus
Query 4001 TGGCATCGACTTCCCCTTATACAATGTTATGAGATCCCTTATGGGATCGACCCGGCCGTT 4060
|||||| ||||| | | | | |||| ||||||||| ||| |||||| || |
Sbjct 31317 TGGCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTA 31258
Query 4061 CTTTATGCAGACAAAAGCCATTCTATGGATTTGTCCGATATTATATCACACATTTCGAAT 4120
| ||||| || ||||||||||| || || || | ||| || || | ||
Sbjct 31257 ATCTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAA 31198
Query 4121 AGTCCGTATAAACCTATACCATCAAAGAAAGTTCTCAGGACAGCTTTATATACT---CCG 4177
|||| ||| || || || |||||||| || || ||| ||||| || |||
Sbjct 31197 TATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACT--TTTATCAACAGTCCCG 31140
Query 4178 GGAGTGAATGTAAGAGAATTCCTATCAGAAA----TCAATGAGAACGGATTATCAAAGGA 4233
| ||||| || | ||| | |||| ||||||| | || ||| |||
Sbjct 31139 CAACAGAATGGAAAA-----CCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGA 31085
Query 4234 AGACCTTGTGATTGGTTTGAAAGGGAAGGAGAGAGAGGTTAAGAGAACGGGACGATATTT 4293
| | ||||| || || || ||||||||| || | |||| |||| || ||| |||
Sbjct 31084 ATATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTT 31025
Query 4294 CTCACTCATGAGTTGGAATCTAAGACTGTATTTTGTCATCACAGAGTATTTAATCAAGAA 4353
| || ||| ||||| ||||| ||||| || || ||| ||||| || ||
Sbjct 31024 TGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAACAA--TATTTGATTAAAGT 30967
Query 4354 ATATTATGTACCACTTTTTTCCGGGTTGACTATGGCTGACAGTTTTAATATGGTTATGAG 4413
||| ||| ||| | ||||| || ||||||||||| || |||||| || | |
Sbjct 30966 GCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAA 30907
Query 4414 AAAACTGATCGATCGTACATCTGGGCAAGGAGAGAAAGGATATGAAAGAATCACTTTTGC 4473
|| || | ||| | | ||| ||||| | ||||||||| || || ||||
Sbjct 30906 GAAGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGC 30847
Query 4474 AAATCACTTCGATTATTCAAAATGGAACAACACACAAAGAGGGAAAGCAAATAATCCAGT 4533
||||| | ||||| ||| |||||||| ||||||| |||| || ||||| ||
Sbjct 30846 TAATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGT 30787
Query 4534 GTTCCGAGTTATGGGGAAATTCTTGGGGCTCCCAAATATCATCTCAAGAACTCATGAGTT 4593
||| ||| ||||| |||| || ||| || ||| | ||||| |||| ||||| ||
Sbjct 30786 TTTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATT 30727
Query 4594 CTTCGAGAGGAGCTGGATTTACTACAATGACAGATCGGATTTGATGGAACTAGTTGAAGG 4653
|||| | ||| | ||||| ||||| | ||| | ||| | ||| | | | ||||
Sbjct 30726 CTTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGC 30667
Query 4654 TGAAATCCGCAACCGAACCACCCA--AAGA--GTTTGCTGGAATGGGCAACTGGGGGGAC 4709
| | | || | || || | |||| |||||||||||||| ||| || ||||
Sbjct 30666 T-CGTTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGAC 30608
Query 4710 TTGAAGGGCTAAGACAAAAAGGATGGAGTGTGGTAAGCCTACTTGTA---ATTGAACGTG 4766
| || ||||| |||||||||||||| ||| | || | || || ||| || | |
Sbjct 30607 TAGAGGGGCTGAGACAAAAAGGATGAAGTATCGT-----TTATTATAAACATTAAAAGAG 30553
Query 4767 AAGGCAAAATACGAAACACAAAAATCAAAATACTCGCACAGGGGGACAATCAAGTTGTTT 4826
|||| ||| | ||| || | | | | || | || || || || ||||||||||| |
Sbjct 30552 AAGGTAAAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCT 30493
Query 4827 GCACCTCATATAAA 4840
| || |||||||
Sbjct 30492 GTACTCAATATAAA 30479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 29687161407592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |