Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_033731.1 Length=12548 Score E Sequences producing significant alignments: (Bits) Value seq1802 127 2e-25 >seq1802 Length=132586 Score = 127 bits (140), Expect = 2e-25 Identities = 260/380 (68%), Gaps = 11/380 (3%) Strand=Plus/Minus Query 6258 AATTAAAATTAACAGGGAGGTTTTTTGCTTTAATGTCTTGGGAGTTGAGAGAGTATTTTG 6317 |||||||| || ||| || ||||||||| | ||||| ||| | || ||||| ||||| | Sbjct 31048 AATTAAAAG-AATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCG 30990 Query 6318 TTATAACTGAGTGGCTCATAAAGAAGTATTTCGTTCCGTTACTAAGAGACTTAACAATGG 6377 | ||||| | | | || || | |||| || || || | | || || |||| Sbjct 30989 TAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGG 30932 Query 6378 CAGACGACTTGAATGATGTCATAAGTAAAATGTTGTCTAGTACATCAGGACAAGGGTTGG 6437 |||| ||| | ||| ||| ||| || ||||| || | | || |||||||| | Sbjct 30931 CAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGGGTTAG 30872 Query 6438 ATGACTACTCAGTAG-TATCTATTTCTAACCACTTAGATTACGAGAAATGGAACAATCAC 6496 ||| || | | || || | ||| |||| || | |||| || || ||||||||||| Sbjct 30871 ATGGATA-TGAATATATAACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCAT 30813 Query 6497 CAAAGGAAGGAATCAAATGATCCTGTATTCAGAGTGATGGGTCAATTTTTGGGAAAGCCT 6556 ||||| | ||| | || ||||||| |||| ||| ||||| |||||||| || | ||| Sbjct 30812 CAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCT 30753 Query 6557 AACTTATTCACTAGGACACATGAGTTTTTCGAGAAATCG---TTGATTTATTATGTTGAT 6613 || || || || | || ||||| || ||| | |||| || |||||||| || Sbjct 30752 AATTTGATCTCTCGAACCCATGAATTCTTCCA---ATCGAGTTTAATTTATTACAACAAT 30696 Query 6614 AGACCTGATTTGATAAGAGT 6633 ||||||||| | || | ||| Sbjct 30695 AGACCTGATCTAATGACAGT 30676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40035111395968