Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq250 100 1e-15 seq882 93.3 2e-13 >seq250 Length=5469655 Score = 100 bits (110), Expect = 1e-15 Identities = 175/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 626199 TCGAATGGGAGGACTACTTTATGATGCTGGCCCTTCTCTCGGCCCAGCGCTCCAAGGACC 626258 |||| |||| ||| | ||| ||| | ||||| | || | || | ||| |||||||| Sbjct 1287982 TCGACTGGGCGGAGTGCTTCATGGCGATGGCCTTCCTGGCCGCGAAACGCAGCAAGGACC 1287923 Query 626259 CCAACACTCAGGTCGGGGCCTGCATCGTCAACGAGGACAAGCGCGTCGTGTCTATGGGCT 626318 || || |||||||| || |||||||| ||||||||||| || ||||| || || | Sbjct 1287922 CCTCGACACAGGTCGGTGCGTGCATCGTGAACGAGGACAACCGTATCGTGGGCATCGGGT 1287863 Query 626319 ACAACGGCTTCCCGCGTGGCTGCAATGACGACGTCTTTCCTTGGAAGCGCGATAGCGCAT 626378 ||||||| ||||| ||||||| |||||| | || || ||| ||| | || Sbjct 1287862 ACAACGGATTCCCCAAGGGCTGCAGTGACGATGAGTTCCCGTGG----TCGAAAACG--- 1287810 Query 626379 GTGAGGACATT---CTCGACAGCAAGAGCCTCTATGTGGTTCACGCCGAACTCAACGCCA 626435 ||||| | ||||| | ||| ||| || ||| ||||| || | ||||| | Sbjct 1287809 --TCGGACAATCCGCTCGAGACGAAGTACCTGTACGTGTGCCACGCGGAGGTGAACGCGA 1287752 Query 626436 TCCTCAACAAGAAC 626449 | || ||||||||| Sbjct 1287751 TACTGAACAAGAAC 1287738 >seq882 Length=7972872 Score = 93.3 bits (102), Expect = 2e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 21735 TGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACC 21794 || ||||||||||| || | ||| | |||||||| || ||||| ||||| || || Sbjct 56845 TGTGCGATGCGATCCCCTTTCTTAACTTCAAAGTTTGTCTCGGAGTGATTGAACAGTACA 56904 Query 21795 ACCCCGACCTTGCCCCTATAAGAACT-GTCGACGACCCCGGCGCCGACGTCGAGCCCGTT 21853 || ||||| ||||||| | || || ||||||||| |||||||| || |||| ||| Sbjct 56905 ACTCCGACGTTGCCCCGGT-AGTCCTCGTCGACGACACCGGCGCCCACATCGATGAAGTT 56963 Query 21854 CTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAG 21893 |||| |||| ||| || | ||||| || ||||| ||| Sbjct 56964 TTTCACAGCCAAACCGGAACGTGGAGCCACCCGGCCATAG 57003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084705982286772