Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1727 257 5e-66 seq4926 192 2e-46 seq4364 190 7e-46 seq3234 188 2e-45 seq6448 156 1e-35 >seq1727 Length=1251 Score = 257 bits (284), Expect = 5e-66 Identities = 177/200 (89%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| || |||||| | || | |||| | | ||||||||||| |||||| Sbjct 257 CTCCCACCTATGCTGCACCTCCTATATCGCCTTACAATGCCAGACTAGAGTCACGCTCAA 198 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| | Sbjct 197 CAGGGTCTTCTTTCCCCGCTGGTGCATCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTCG 138 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 137 ATAGTAGATAAGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 78 Query 417 ACGAGGCATTTGGCTACCTT 436 ||||||||||||||||| || Sbjct 77 ACGAGGCATTTGGCTACTTT 58 >seq4926 Length=1199 Score = 192 bits (212), Expect = 2e-46 Identities = 111/114 (97%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 637 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTG 578 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 577 AATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 524 >seq4364 Length=1095 Score = 190 bits (210), Expect = 7e-46 Identities = 110/113 (97%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 575 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGA 634 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 635 ATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 687 >seq3234 Length=1197 Score = 188 bits (208), Expect = 2e-45 Identities = 109/112 (97%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 622 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAA 563 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 562 TTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 511 >seq6448 Length=1454 Score = 156 bits (172), Expect = 1e-35 Identities = 122/146 (84%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| || |||||| | || | | |||| | | |||||||||||||||||| Sbjct 419 CTCCCACCTATGCTGCACCTCCAATATCGTCTTACAATGCCAGACTAGAGTCAAGCTCAA 478 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| |||| | | ||||||||||||||||||||||||| ||||| | Sbjct 479 CAGGGTCTTCTTTCCTCGCTAGTGCATCCAAGCCCGTTCCCTTGGCTGTGGTCTCGCTTG 538 Query 357 ATAGTAGATAGGGACAGTGGGAATCT 382 |||||||||| |||||| || ||||| Sbjct 539 ATAGTAGATAAGGACAGAGGAAATCT 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635027960608