Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 407 1e-108 seq5733 194 1e-44 >seq2 Length=295332 Score = 407 bits (450), Expect = 1e-108 Identities = 1217/1861 (65%), Gaps = 49/1861 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || ||||| || |||||||||||| | |||| |||||| | | ||| |||||||| ||| Sbjct 212080 TCCACCGTAAATTGGATCGCATTAACGGCCGGCTTGGTGCGCAAATAATACATGCCCGTC 212021 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || | || ||| | |||||||| ||||| | | || |||| ||||||||| Sbjct 212020 TTCAATCCCATCTTCCAGCCGTAGAAATGGATCGACGTGAGCTTGCCATAGTTCGGCTCG 211961 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || || || || || ||||| || ||||| ||| | ||| ||||| |||||||| Sbjct 211960 GCTACGTGTATGTTGAACGATTGTGATTGATCAATGAATGCACCTCGATCGGCAGCCATT 211901 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 | |||| | |||| || ||||| || || ||||||||| ||| | ||| || Sbjct 211900 TTAATGCATGTTTTTACCGAGATTTCCCACACTGTTTTGTACAGGTCACGGATCTCTTTT 211841 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT--CG 65375 ||||| || ||| |||| || ||| | | | ||| || ||| || Sbjct 211840 GGAATTGTTTCTATGCTTTGGATGGATCCATTATTGGACAAGATGTTGTTCTTCATATCG 211781 Query 65376 AC-TCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 | || ||||| |||| | | |||| ||| | | ||| | || | || ||| Sbjct 211780 AGATC---CCACAGCCCCATCGCAGTCAGATCTTGCAGGAGATGATGGTTCACCACCTGG 211724 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 |||||||| |||| ||||| || ||| | ||| || ||| || || || || ||| Sbjct 211723 AACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTGTACGGCTCGAAAGACTCA 211664 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 ||||||| | ||||| || || || || || ||||| ||||| | | ||||| || Sbjct 211663 TTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGCCAAAAGTAATGAATTA 211604 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG 65614 || | ||||| | || | || || | || ||| |||||||||| | | | || Sbjct 211603 CGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAGTTCCATA---GATC--CG 211549 Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGG 65674 ||| ||| | |||||| || | || | || | || |||| || Sbjct 211548 TCGGT-TCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGGACTTCCTTCA 211490 Query 65675 AAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAA 65734 | | |||||| || ||| | ||| | | || || | || || || || | Sbjct 211489 TACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGCTTCCAGCGCACCATAG 211430 Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 |||||||| || || || || |||| || | | ||||| ||||| |||||||| ||| Sbjct 211429 TAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTACGG-ATA 211371 Query 65795 CC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | ||| | | || | ||||||| |||||| || || || || ||||| | || || Sbjct 211370 GCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCCAATGGGCCTGTGGCG 211311 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 || || || || ||||||| ||||| || ||||| ||||||||||| || |||| Sbjct 211310 CATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTGATATCGATTATTTTGTTCAG 211251 Query 65914 ATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACG 65973 |||||| ||||| | | ||| | || | || |||||| | || Sbjct 211250 ATTGCGCGTCACAATCTTAGCGA--CTTCCTTAAGCTTTA----CAAAATCGTAAG---- 211201 Query 65974 ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGC 66033 || || | | | || ||| || ||||| | || || || || || || || Sbjct 211200 -TCT----TGTCTGTCTTTACGAACATGTTTAGGGCGATCGAAGCCAGATTACACACTGC 211146 Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||||| | | ||||| ||||| || ||||||| ||| ||| |||||| Sbjct 211145 AATTTCGTCTTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGGT 211086 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||| | |||||||||||| || || |||||||||||||||||||||| ||| ||||| Sbjct 211085 GCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTAC 211026 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC----CG 66209 ||| || || || || || |||||||| || | ||| | | | ||||| | || || Sbjct 211025 GCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCCTGTGCCCTTACTTGTCG 210966 Query 66210 TACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGT-TCGAAGGATTCACCC 66268 | | | || || |||| |||||| | ||| || ||| ||||| ||||||| Sbjct 210965 AATGAATCGTCCCTCCTTC----TCGTAACGCGTGTACAG-TGTCTCGAACTCTTCACCC 210911 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA---TCACCATCC 66325 || ||| | || | ||||| | ||| || |||||||| ||| || | || Sbjct 210910 CAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGCC 210851 Query 66326 TGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCT 66385 | |||| || |||||| ||||| |||||||| | |||||||| | || ||||| Sbjct 210850 T---CTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTGCA 210794 Query 66386 CGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGC 66445 || |||||| ||||| ||||| || || || ||||| || | || ||||| Sbjct 210793 CGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACATCACCATGC 210734 Query 66446 CATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAG 66505 |||||||| ||||| ||||| || | ||| |||||| |||||| || || || || Sbjct 210733 CATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATAT 210674 Query 66506 CGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTG 66565 || || |||||| | || |||| ||||||||| | |||||| || | || || ||| Sbjct 210673 CGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTG 210614 Query 66566 CCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCC 66625 || |||| | ||| || || ||| |||||||||||| ||||| || || || Sbjct 210613 CCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCCAATTCCGCCTGCT 210554 Query 66626 GTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683 | || || || |||| || | || | || | || || ||||| || Sbjct 210553 GATTTTGAAAT--CAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAATACTATCGT 210496 Query 66684 CCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGA 66743 | ||||| || || | || || || || || | || || |||| || | Sbjct 210495 CAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGCTGCCGCAAACA 210436 Query 66744 GGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAG 66803 ||| |||| || || ||||| ||| | || | | ||||| ||||||||| | | Sbjct 210435 TGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGTATGTCTCGATGGCTG 210376 Query 66804 CATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTT 66863 |||| |||| ||| ||||| || |||| ||| ||||||| | || || || |||| Sbjct 210375 CATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATGTGCTGCGGACGTT 210316 Query 66864 CGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGT 66923 | || | | | ||||||| | || || ||||| ||||||| || |||| ||||||| Sbjct 210315 CAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATGTTTTGAACCCAAAGT 210256 Query 66924 A 66924 | Sbjct 210255 A 210255 >seq5733 Length=11217 Score = 194 bits (214), Expect = 1e-44 Identities = 303/433 (70%), Gaps = 3/433 (1%) Strand=Plus/Minus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||||||||| || ||| | ||| || ||| ||| || || ||||| | || | Sbjct 2594 TGTTCAATGCCATTGAAACGTTGCCGTGCGTAAAGAAGAAGGCAGACTGGGCACTGAACT 2535 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||||| | || | | ||| | ||||| ||||| | |||| ||||||| ||||| | Sbjct 2534 GGATCTCGAGCAAGAAGGCCAACTTTGGCGAACGTGTCGTGGCGTTTGCGGCCGTCGAAG 2475 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || ||||| || |||||||| || || ||| | ||||| ||||| || |||| Sbjct 2474 GCATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGCCTGATGC 2415 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 | || ||||| ||| || ||| |||| || |||||||| || |||| || || |||| Sbjct 2414 CGGGACTGACGTTCTCGAACGAGCTGATTTCGCGCGACGAAGGACTGCACTGCGACTTTG 2355 Query 61637 CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGA 61696 | || | ||||| || ||||| | || ||| ||||||| ||| || | Sbjct 2354 CCTGCCTGATGTTCAA---GTACCTGGTACAGAAACCCTCGAAGGAGCGCGTGACGGACA 2298 Query 61697 TTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCAC 61756 | ||||||| ||||| ||||| || |||||| |||| | || |||| ||| Sbjct 2297 TCATTCGTGATGCGGTTGTGATCGAGCAAGAATTTTTGACGAAAGCCCTGCCGGTCGACA 2238 Query 61757 TCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGT 61816 | |||| |||||||| | || ||||||||||| ||||| || || ||||| ||| || Sbjct 2237 TGCTCGGTATGAATTGCGATCTGATGTCGCAGTACATTGAGTTCGTGGCCGATCGTTTGC 2178 Query 61817 TGGTCGATTTGGG 61829 || | || ||||| Sbjct 2177 TGCTGGAGTTGGG 2165 Score = 183 bits (202), Expect = 2e-41 Identities = 203/268 (76%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||||||||||||||||||||| ||||| ||||||||| | || || |||||||| |||| Sbjct 2972 AGGCGGAAGCTTCCTTCTGGACCGTGGAAGAGGTCGATCTATCGAAGGACATGAAAGACT 2913 Query 61166 GGGAG-CGTTTAT--CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 |||| || | | |||||| ||| |||||||| || ||| | || ||||||| Sbjct 2912 GGGAATCGCTGAAACCGAGCG---AACGTCATTTCATCTCGCACGTGCTTGCCTTCTTTG 2856 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 |||| || || |||||||| || ||||| | ||||||| ||| |||||||| || | Sbjct 2855 CCGCATCCGATGGTATCGTTAACGAGAACCTGGTGGAACGCTTCAGTCAGGAGGTACAGG 2796 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 | |||| || || || || |||||||| || || || ||||| ||||| ||| |||| Sbjct 2795 TAACGGAAGCACGCTGCTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGA 2736 Query 61343 TGTACAGTGTTCTCATCGATACGTACAT 61370 ||||| | || ||||| |||||||| Sbjct 2735 TGTACTCGCTGCTAATCGACACGTACAT 2708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397489689291680