Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq14 181 2e-43 seq36 168 1e-39 seq55 138 2e-30 seq25 136 7e-30 >seq14 Length=2944040 Score = 181 bits (200), Expect = 2e-43 Identities = 148/180 (82%), Gaps = 10/180 (6%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || || |||||||||||| | ||||||||||||||||||||||||||||||||||||| | Sbjct 368289 CACCAATAGGGTAAAACTTAGCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT-T 368231 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || | |||||||||| ||||||| ||||| ||||| | |||||||||||||||| Sbjct 368230 TAAAGACTGAACAATCCTACGCTTAGTGAATTTTGCTTTACAACGATAGGAAGAGCCGAC 368171 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||| |||||||| |||||||||||||| | ||||| ||||||||||||| Sbjct 368170 ATCGACGGATCAAA---------TGCTATGAACGCTTGACGGCCACTAGCCAGTTATCCC 368120 >seq36 Length=267210 Score = 168 bits (186), Expect = 1e-39 Identities = 122/140 (87%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 64 CGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 || ||| ||||||| ||||| ||||| | | ||||||||||||| |||||| ||||| Sbjct 246818 CGTTCTCAACCCAGTTCACGGTCCCT-TGAAAGGGTGAACAATCCTACGCTTGGTGAATT 246876 Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 246877 TTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAA 246936 Query 184 CGCTTGGCTGCCACAAGCCA 203 |||||||| ||||||||||| Sbjct 246937 CGCTTGGCGGCCACAAGCCA 246956 >seq55 Length=59524 Score = 138 bits (152), Expect = 2e-30 Identities = 116/140 (83%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 79 TCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138 ||||||||| | | | ||||| |||| || |||||| ||||| ||||| ||||| Sbjct 56696 TCACGTTCCTT-TGAAAGGGTGTACAAACCTACGCTTGGTGAATTTTGCTTTATAATGAT 56638 Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 | ||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct 56637 AAGAACAGCCGACATCGAAGGATCAAAAAGCCAGATCGCTATGAACGCTTGGCGGCCACA 56578 Query 199 AGCCAGTTATCC-CTGTGGT 217 |||||||||||| |||| || Sbjct 56577 AGCCAGTTATCCACTGTAGT 56558 >seq25 Length=1392011 Score = 136 bits (150), Expect = 7e-30 Identities = 98/113 (87%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 ||||||| | | |||| ||||| |||| | |||||||||||| || |||||||||| Sbjct 22062 GAACAATTCTAAGCTTGGTGAATTTTGCTCCACAATGATAGGAAGAACCAACATCGAAGG 22003 Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 22002 ATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCCT 21950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854397351360