Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_033192.1 Length=10072 Score E Sequences producing significant alignments: (Bits) Value seq3 1400 0.0 >seq3 Length=16089237 Score = 1400 bits (1552), Expect = 0.0 Identities = 1717/2333 (74%), Gaps = 12/2333 (1%) Strand=Plus/Plus Query 4275 CAAGCG--GGATCAGGTCATCGCGATCTGTCCCGAGACCTACCAGTTCTGTTGTACGGAC 4332 |||||| ||||||||| | || | ||| | ||||| || |||||| ||||| ||| Sbjct 162 CAAGCGAGGGATCAGGTGGTTGCTGTTTGTTCAGAGACGTATAGGTTCTGCTGTACCGAC 221 Query 4333 GACATTGGGGTGCGCGAAAGTGTGTTACCCCCGCCCGGACTAGGCATTGTCGCAATACGT 4392 || ||||| || |||||||| || || || || || || ||||| || || || ||| Sbjct 222 GAAATTGGTGTCAAGGAAAGTGTATTGCCACCACCGGGTCTCGGCATCGTGGCGATCCGT 281 Query 4393 GGAAAACCTTTCAAGGTAGACAAGCGTCAACATCTCATGGTCATCCACTTCCGCAACACG 4452 || ||||| |||||||| |||||| | |||||||||||||| ||||||||||||| ||| Sbjct 282 GGGAAACCATTCAAGGTCGACAAGAGGCAACATCTCATGGTTATCCACTTCCGCACCACA 341 Query 4453 GATGAACTGCTGAGTTACATTCAAAAGTTCTTCGTGAACATGAATGTGCGAGTTGCAGTG 4512 |||||||| |||| |||||||| |||||||||| |||||||||| | || || || Sbjct 342 GATGAACTTCTGAACTACATTCAGAAGTTCTTCGAAGACATGAATGTCAGGGTCGCTGTC 401 Query 4513 GTTGGGGGTAGTAAAGGGGATTTTCCGGCAGTATCAGAGCACCTGTATATCGTTCATCGC 4572 || || || | ||||| || || ||||| || || | ||| | | | |||| ||| | Sbjct 402 GTGGGCGGGAACAAAGGTGACTTCCCGGCCGTCTCTG--CACATCTCTGTCGTGCATAGA 459 Query 4573 GATAACCGGCAGATCACTACCACCCATGCCTGTGCAGCTGGTGGCGGTCTCGAATGGTAC 4632 || ||| | || | || ||||||||||| ||||| || || || || || ||||||||| Sbjct 460 GACAACAGACAAACGACAACCACCCATGCGTGTGCTGCAGGAGGAGGCCTTGAATGGTAC 519 Query 4633 TGGTCCCAAACCAACGCTTACAAGCAGTACTGGGACAAGGCCGACGGTGAGTATGAAGTT 4692 ||||| || || ||||| ||||| || |||||||||||||||||| |||||||||| || Sbjct 520 TGGTCTCAGACAAACGCGTACAAACAATACTGGGACAAGGCCGACAGTGAGTATGAGGTG 579 Query 4693 GACTTCAGCATCCCGCCAAGACGCGAGACGTTCTGTCGCAACGCTGTTCGCGAATGTAGA 4752 || ||||| ||||| || || || ||||| ||||| |||||||| || | || || ||| Sbjct 580 GATTTCAGTATCCCTCCTAGTCGAGAGACCTTCTGCCGCAACGCCGTAAGGGAGTGCAGA 639 Query 4753 GAACAGTGGTATATCTCGCTGAAGAATGTCGGACAGAAGTACGGTTCGTTCTACAAGTGG 4812 || |||||||||||||| || ||||| || || ||||| || || | ||||| |||||| Sbjct 640 GAGCAGTGGTATATCTCTCTCAAGAACGTAGGTCAGAAATATGGGACATTCTATAAGTGG 699 Query 4813 CACATCGATAACATTGCTTCAGTACCACCAGAAGACGTTCGCGGGATCAAGAAGCTGTGC 4872 || |||| ||||| || || | || || ||| | || ||||| |||||||| ||||| Sbjct 700 CATGTCGAGAACATAGCGTCCATCCCCCCCGAAAATGTCCGCGGCATCAAGAAACTGTGT 759 Query 4873 CAAGACAGTGGTGAAGACTTCGGTATCATCAAGAACGGTGAGTTCATCGTTAGACCGATG 4932 ||||||||||| || |||||||| || |||||| |||| ||||||| || || |||||| Sbjct 760 CAAGACAGTGGGGAGGACTTCGGGATAATCAAGGACGGGAAGTTCATTGTCAGGCCGATG 819 Query 4933 GACATCGAGTTTTACGAAAAGGCTTATGACGGTGAGCGATTT-ATCGATCTGACGTATCC 4991 || || ||||| || || ||||| | | |||| || | || || || || ||| Sbjct 820 GATATAGAGTTCTATGAGAAGGCGTTTAACGGAC-GCAAGTTCATTGACCTACAGTACAA 878 Query 4992 AGACAACGATCCCATGTGCCCCCGCGC-CGATCATGTCGGTTATCTACTGGTCGGCAAGT 5050 ||| || || || ||| |||| | | ||| || | || || |||| ||||| |||| Sbjct 879 AGATAATGACCCGATGAGCCCAAGTGAGCGA-CACGCGGGCTACTTACTCGTCGGTAAGT 937 Query 5051 CTTCTAGGCTCATGCAAGGCGCGAGCATGTTAGAGGCGACTAGGGATTTCGATCCCTACG 5110 | ||||| || ||||| || || |||||||| |||||||| | ||| || || || |||| Sbjct 938 CATCTAGACTGATGCAGGGAGCAAGCATGTTGGAGGCGACGAAGGACTTTGACCCTTACG 997 Query 5111 GTACCTATATCCCACCAATAGCCCTGCGAAATGGTGTCCCGGGCTGTGGAAAGACAAAGT 5170 | ||||| || || || || | |||| || || || ||||| ||||| || ||||||| Sbjct 998 GGACCTACATACCCCCGATCACATTGCGTAACGGGGTGCCGGGATGTGGGAAAACAAAGT 1057 Query 5171 ACATCATCGACAACGCGGAGCAAGCGGACTACATCCTGACGACCACTAGGGAGAACAAGC 5230 ||||||||||||||||||| |||| || || ||||| || || | |||||||| | Sbjct 1058 ACATCATCGACAACGCGGATACGTCGGATTATATTCTGACAACTACCCGCGAGAACAAAC 1117 Query 5231 AGGACATCGTTTCTAGATGTCCGACAATGCGTTCTCGCGTGAGAACCGTCCACTCCGTCA 5290 ||||||||| | | ||||| |||| || | ||| |||| || ||||| |||| Sbjct 1118 AGGACATCGCGACGCGCTGTCCTGTTATGCAGTCGAGAGTGCGAACAGTTCACTCAGTCA 1177 Query 5291 TCATTAACAGCAAGACGGTTGAGAACACG--TCGGTTAGGAGATTGTTCATTGATGAGGC 5348 || | |||| || ||| |||| || ||| || || | ||| | ||||| || ||||| Sbjct 1178 TCGTCAACAACAGGAC-TTTGA-AAAACGTCTCTGTGAAGAGGCTATTCATCGACGAGGC 1235 Query 5349 GTTGATGTCACATGCTGGTGAGTTGCTCATTGCGATAACAATCCTGCGCCCAGAGTCTGT 5408 | ||||||| || ||||||||||||||||| ||||| || ||||||||||| |||| || Sbjct 1236 GCTGATGTCGCACGCTGGTGAGTTGCTCATAGCGATTACCATCCTGCGCCCGGAGTTCGT 1295 Query 5409 TGAAATGAGCGGTGACGTTAATCAAATACCGTTCATCAATCGCGCGGCTGCTATCATAAT 5468 || |||||||| || || |||||||| |||||||| ||||| || || || ||||| || Sbjct 1296 GGAGATGAGCGGGGATGTCAATCAAATCCCGTTCATTAATCGTGCCGCAGCCATCATCAT 1355 Query 5469 GAAGTTTGACGATGCGGCTCGCATATGTGACTCCATCACTCACGCTAGCGTGTCATATCG 5528 ||| ||||| ||||| | || || |||||| | | ||||| || || |||| || || Sbjct 1356 GAAATTTGATGATGCCTCGCGTATCTGTGACAGCGTAACTCATGCGAGTATGTCTTACCG 1415 Query 5529 AGTTCCGAAGGACGTAGCGGCCCTATTCAGCTCTTCGTATGAGCAAGGTTTTACCACTAA 5588 ||| || ||||| || || || || |||||| |||| ||||| || ||||| || || || Sbjct 1416 AGTGCCCAAGGATGTTGCTGCGCTGTTCAGCCCTTCATATGAACAGGGTTTCACGACGAA 1475 Query 5589 CAACAAGATCGAGAGTTCAATGAAGTGGGTCGAGGTAACTGGTTACAATGAATTACCCAA 5648 ||| | ||||| | ||| | |||||||| ||||| | || | | | || | || || Sbjct 1476 CAATCACATCGACAACTCACTAAAGTGGGTTGAGGTTTCAGGATTCCAGGACCTCCCGAA 1535 Query 5649 GGCCGATCCCGTCCTAGTTTTCAAGCAGGCTGAGAAAGCTATGTTGCGGCTTGAAGGGTA 5708 | || || ||||| || |||||||||||||| || | ||| | || || || || || Sbjct 1536 AGAAGACCCTGTCCTGGTATTCAAGCAGGCTGAAAAGACCATGCTACGTCTGGAGGGATA 1595 Query 5709 TGACGTGTCGACTGTTCACGAATATCAGGGTAAACAGTCGCAGAAGATCTCGTTGTACAG 5768 ||||||||| || |||||||| || ||||| |||||||| || |||||||||||||| Sbjct 1596 TGACGTGTCAACAGTTCACGAGTACCAGGGCAAACAGTCCGAGCGTATCTCGTTGTACAG 1655 Query 5769 ACATTCGACTATACCATCGGACCAAATCTATATGTCTGATCCGCACATATTGGTCGCACT 5828 ||| ||||| || || || ||||| ||||| ||| ||||| ||||| | ||||| | Sbjct 1656 ACACTCGACCATCCCGTCAGACCAGATCTACTCGTCGGATCCTCACATTCTCGTCGCCTT 1715 Query 5829 CTCAAGGCACACACAGAGCCTGGTTTATTACACCAGACTCAAAGATAAGGTTTGTGACGT 5888 || | ||||| ||||| ||| | |||||||| ||||| || || ||||||||||| || Sbjct 1716 ATCGCGACACACCCAGAGTCTGATATATTACACTAGACTGAAGGACAAGGTTTGTGAAGT 1775 Query 5889 CATCGATAAGGCCGTTGGAGAACTGGAGAAGGTTCAGCAACGCAGCATGTCCGGTGGTGG 5948 ||| | || | || | |||| ||||| | || ||| |||||||||||||| Sbjct 1776 GATCTCGAGAGCTACAGAAGCATTGGAAAAGGTCAACCACCGCTCTATGTCCGGTGGTGG 1835 Query 5949 TCCGTCGTGCGCAATGATCATGAACACCAATTACGCGGGACCAAAGTACACAAAGATACT 6008 || ||||| | ||||| ||||||||||| || | || || || || | ||||| || Sbjct 1836 ACCTTCGTGTGTCATGATGATGAACACCAAATATGACGGTCCGAATTATTCGAAGATCCT 1895 Query 6009 CGAATACGGGTTAGCCTATGATGTCCCTCGTTATAGGTTGTTCAAATCCGTGGCATCGAT 6068 | |||||||| |||||||| || ||||| || ||||||||||| | || ||| | Sbjct 1896 ACCCTTTGGGTTAGCGTATGATGTACCACGTTACCGGCTGTTCAAATCCATCGCGTCGGT 1955 Query 6069 CCTACGACCGAGACACACCAGAATCAGGTTGAACAACGTTACACCGCATGTTGAGATTTT 6128 || |||| | | || | ||||| |||| |||| || || || || || | | Sbjct 1956 TCTGAGACCTCGCTATACGAAGATCAGACTGAATCACGTAACGCCTCAGGTGCAGGCTCT 2015 Query 6129 GCAGCAGTGGTATGATACCATTCTGCCGACAATCAGCACCGCCGACAGAACGTTTGATAA 6188 ||| || ||||||||| ||||||| || |||| || | ||| | || | || || Sbjct 2016 GCAACAATGGTATGATGCCATTCTACCCGAGGTCAGTACTGTGGACCGGACATACGACAA 2075 Query 6189 CCATATGATACATAACGACCCGTTGTCCGTGTCAATTGCTGGAAAAGTGACCCTGGATCT 6248 || ||||| || | || || | ||||| || || || || | || || || || || Sbjct 2076 TCACATGATCCACGATGATCCACTATCCGTTTCGATAGCAGGTAGTGTCACGCTTGACCT 2135 Query 6249 GTCGAAACTGAAATACGACGGTCGTAAATTTGACAACAAGAGACCGGTTCTGCGTACAGG 6308 ||| ||| ||| | ||| || || || |||||||| | | | ||||| || | ||| | Sbjct 2136 GTCCAAAATGAGACCCGAAGGACGCAAGTTTGACAATATGCGCCCGGTGCTTAGAACAAG 2195 Query 6309 AATTGGCTTGGAGCGTATTAGATCCCAGCGTGAATCTCTACTAGCCTACATCAAACGCAA 6368 || || |||||| | || || || ||||| || || || || ||||| ||||| | || Sbjct 2196 CATGGGGTTGGAGAGGATCAGGTCTCAGCGAGAGTCGCTGCTTGCCTATATCAAGAGGAA 2255 Query 6369 CGACGCGGTCCCGATCCCGCTCGAACCAGTCGACCCAACGTACGTCGTGAATCTCATGAT 6428 || || || || |||||| |||||||| | ||||||| ||| |||||| | | ||||| Sbjct 2256 TGATGCCGTTCCCATCCCGATCGAACCAATTGACCCAAAGTATGTCGTGGACATGATGAT 2315 Query 6429 GGAGAAGTTCCAAGGCTACTTCGACCCGGAGAGACTTGAAGGTGTTCTCGGTGTACCCTT 6488 ||| |||||||| || || |||||||| || | ||| || || ||||| || || Sbjct 2316 GGAAAAGTTCCAGGGGTATTTCGACCCTGAAAAACTCAGTGGAGTGCTCGGGACCCCATT 2375 Query 6489 AACCCTCAATTCTGAGTCAATGACCAAGTGGGCATTGGCCCAGGATAAGAGCATAGACAC 6548 ||| || | ||| || || ||| |||||||| |||| ||||| || ||| |||| Sbjct 2376 AACACTGAGTTCAGAATCCATGCATAAGTGGGCGATGGCTCAGGACAAATCCATCGACAT 2435 Query 6549 GACAGTCGATCAGTATTTGCACGAGCAGGATCTGAGCAGATACGAATTCATGA 6601 || || || ||||| || ||||| | ||||| | | ||||| ||||||| Sbjct 2436 GAGCGTGGAACAGTACCTGAACGAGAACGATCTTGGTAAGTACGAGTTCATGA 2488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32115087998240