Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_033192.1
Length=10072
Score E
Sequences producing significant alignments: (Bits) Value
seq3 1400 0.0
>seq3
Length=16089237
Score = 1400 bits (1552), Expect = 0.0
Identities = 1717/2333 (74%), Gaps = 12/2333 (1%)
Strand=Plus/Plus
Query 4275 CAAGCG--GGATCAGGTCATCGCGATCTGTCCCGAGACCTACCAGTTCTGTTGTACGGAC 4332
|||||| ||||||||| | || | ||| | ||||| || |||||| ||||| |||
Sbjct 162 CAAGCGAGGGATCAGGTGGTTGCTGTTTGTTCAGAGACGTATAGGTTCTGCTGTACCGAC 221
Query 4333 GACATTGGGGTGCGCGAAAGTGTGTTACCCCCGCCCGGACTAGGCATTGTCGCAATACGT 4392
|| ||||| || |||||||| || || || || || || ||||| || || || |||
Sbjct 222 GAAATTGGTGTCAAGGAAAGTGTATTGCCACCACCGGGTCTCGGCATCGTGGCGATCCGT 281
Query 4393 GGAAAACCTTTCAAGGTAGACAAGCGTCAACATCTCATGGTCATCCACTTCCGCAACACG 4452
|| ||||| |||||||| |||||| | |||||||||||||| ||||||||||||| |||
Sbjct 282 GGGAAACCATTCAAGGTCGACAAGAGGCAACATCTCATGGTTATCCACTTCCGCACCACA 341
Query 4453 GATGAACTGCTGAGTTACATTCAAAAGTTCTTCGTGAACATGAATGTGCGAGTTGCAGTG 4512
|||||||| |||| |||||||| |||||||||| |||||||||| | || || ||
Sbjct 342 GATGAACTTCTGAACTACATTCAGAAGTTCTTCGAAGACATGAATGTCAGGGTCGCTGTC 401
Query 4513 GTTGGGGGTAGTAAAGGGGATTTTCCGGCAGTATCAGAGCACCTGTATATCGTTCATCGC 4572
|| || || | ||||| || || ||||| || || | ||| | | | |||| ||| |
Sbjct 402 GTGGGCGGGAACAAAGGTGACTTCCCGGCCGTCTCTG--CACATCTCTGTCGTGCATAGA 459
Query 4573 GATAACCGGCAGATCACTACCACCCATGCCTGTGCAGCTGGTGGCGGTCTCGAATGGTAC 4632
|| ||| | || | || ||||||||||| ||||| || || || || || |||||||||
Sbjct 460 GACAACAGACAAACGACAACCACCCATGCGTGTGCTGCAGGAGGAGGCCTTGAATGGTAC 519
Query 4633 TGGTCCCAAACCAACGCTTACAAGCAGTACTGGGACAAGGCCGACGGTGAGTATGAAGTT 4692
||||| || || ||||| ||||| || |||||||||||||||||| |||||||||| ||
Sbjct 520 TGGTCTCAGACAAACGCGTACAAACAATACTGGGACAAGGCCGACAGTGAGTATGAGGTG 579
Query 4693 GACTTCAGCATCCCGCCAAGACGCGAGACGTTCTGTCGCAACGCTGTTCGCGAATGTAGA 4752
|| ||||| ||||| || || || ||||| ||||| |||||||| || | || || |||
Sbjct 580 GATTTCAGTATCCCTCCTAGTCGAGAGACCTTCTGCCGCAACGCCGTAAGGGAGTGCAGA 639
Query 4753 GAACAGTGGTATATCTCGCTGAAGAATGTCGGACAGAAGTACGGTTCGTTCTACAAGTGG 4812
|| |||||||||||||| || ||||| || || ||||| || || | ||||| ||||||
Sbjct 640 GAGCAGTGGTATATCTCTCTCAAGAACGTAGGTCAGAAATATGGGACATTCTATAAGTGG 699
Query 4813 CACATCGATAACATTGCTTCAGTACCACCAGAAGACGTTCGCGGGATCAAGAAGCTGTGC 4872
|| |||| ||||| || || | || || ||| | || ||||| |||||||| |||||
Sbjct 700 CATGTCGAGAACATAGCGTCCATCCCCCCCGAAAATGTCCGCGGCATCAAGAAACTGTGT 759
Query 4873 CAAGACAGTGGTGAAGACTTCGGTATCATCAAGAACGGTGAGTTCATCGTTAGACCGATG 4932
||||||||||| || |||||||| || |||||| |||| ||||||| || || ||||||
Sbjct 760 CAAGACAGTGGGGAGGACTTCGGGATAATCAAGGACGGGAAGTTCATTGTCAGGCCGATG 819
Query 4933 GACATCGAGTTTTACGAAAAGGCTTATGACGGTGAGCGATTT-ATCGATCTGACGTATCC 4991
|| || ||||| || || ||||| | | |||| || | || || || || |||
Sbjct 820 GATATAGAGTTCTATGAGAAGGCGTTTAACGGAC-GCAAGTTCATTGACCTACAGTACAA 878
Query 4992 AGACAACGATCCCATGTGCCCCCGCGC-CGATCATGTCGGTTATCTACTGGTCGGCAAGT 5050
||| || || || ||| |||| | | ||| || | || || |||| ||||| ||||
Sbjct 879 AGATAATGACCCGATGAGCCCAAGTGAGCGA-CACGCGGGCTACTTACTCGTCGGTAAGT 937
Query 5051 CTTCTAGGCTCATGCAAGGCGCGAGCATGTTAGAGGCGACTAGGGATTTCGATCCCTACG 5110
| ||||| || ||||| || || |||||||| |||||||| | ||| || || || ||||
Sbjct 938 CATCTAGACTGATGCAGGGAGCAAGCATGTTGGAGGCGACGAAGGACTTTGACCCTTACG 997
Query 5111 GTACCTATATCCCACCAATAGCCCTGCGAAATGGTGTCCCGGGCTGTGGAAAGACAAAGT 5170
| ||||| || || || || | |||| || || || ||||| ||||| || |||||||
Sbjct 998 GGACCTACATACCCCCGATCACATTGCGTAACGGGGTGCCGGGATGTGGGAAAACAAAGT 1057
Query 5171 ACATCATCGACAACGCGGAGCAAGCGGACTACATCCTGACGACCACTAGGGAGAACAAGC 5230
||||||||||||||||||| |||| || || ||||| || || | |||||||| |
Sbjct 1058 ACATCATCGACAACGCGGATACGTCGGATTATATTCTGACAACTACCCGCGAGAACAAAC 1117
Query 5231 AGGACATCGTTTCTAGATGTCCGACAATGCGTTCTCGCGTGAGAACCGTCCACTCCGTCA 5290
||||||||| | | ||||| |||| || | ||| |||| || ||||| ||||
Sbjct 1118 AGGACATCGCGACGCGCTGTCCTGTTATGCAGTCGAGAGTGCGAACAGTTCACTCAGTCA 1177
Query 5291 TCATTAACAGCAAGACGGTTGAGAACACG--TCGGTTAGGAGATTGTTCATTGATGAGGC 5348
|| | |||| || ||| |||| || ||| || || | ||| | ||||| || |||||
Sbjct 1178 TCGTCAACAACAGGAC-TTTGA-AAAACGTCTCTGTGAAGAGGCTATTCATCGACGAGGC 1235
Query 5349 GTTGATGTCACATGCTGGTGAGTTGCTCATTGCGATAACAATCCTGCGCCCAGAGTCTGT 5408
| ||||||| || ||||||||||||||||| ||||| || ||||||||||| |||| ||
Sbjct 1236 GCTGATGTCGCACGCTGGTGAGTTGCTCATAGCGATTACCATCCTGCGCCCGGAGTTCGT 1295
Query 5409 TGAAATGAGCGGTGACGTTAATCAAATACCGTTCATCAATCGCGCGGCTGCTATCATAAT 5468
|| |||||||| || || |||||||| |||||||| ||||| || || || ||||| ||
Sbjct 1296 GGAGATGAGCGGGGATGTCAATCAAATCCCGTTCATTAATCGTGCCGCAGCCATCATCAT 1355
Query 5469 GAAGTTTGACGATGCGGCTCGCATATGTGACTCCATCACTCACGCTAGCGTGTCATATCG 5528
||| ||||| ||||| | || || |||||| | | ||||| || || |||| || ||
Sbjct 1356 GAAATTTGATGATGCCTCGCGTATCTGTGACAGCGTAACTCATGCGAGTATGTCTTACCG 1415
Query 5529 AGTTCCGAAGGACGTAGCGGCCCTATTCAGCTCTTCGTATGAGCAAGGTTTTACCACTAA 5588
||| || ||||| || || || || |||||| |||| ||||| || ||||| || || ||
Sbjct 1416 AGTGCCCAAGGATGTTGCTGCGCTGTTCAGCCCTTCATATGAACAGGGTTTCACGACGAA 1475
Query 5589 CAACAAGATCGAGAGTTCAATGAAGTGGGTCGAGGTAACTGGTTACAATGAATTACCCAA 5648
||| | ||||| | ||| | |||||||| ||||| | || | | | || | || ||
Sbjct 1476 CAATCACATCGACAACTCACTAAAGTGGGTTGAGGTTTCAGGATTCCAGGACCTCCCGAA 1535
Query 5649 GGCCGATCCCGTCCTAGTTTTCAAGCAGGCTGAGAAAGCTATGTTGCGGCTTGAAGGGTA 5708
| || || ||||| || |||||||||||||| || | ||| | || || || || ||
Sbjct 1536 AGAAGACCCTGTCCTGGTATTCAAGCAGGCTGAAAAGACCATGCTACGTCTGGAGGGATA 1595
Query 5709 TGACGTGTCGACTGTTCACGAATATCAGGGTAAACAGTCGCAGAAGATCTCGTTGTACAG 5768
||||||||| || |||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 1596 TGACGTGTCAACAGTTCACGAGTACCAGGGCAAACAGTCCGAGCGTATCTCGTTGTACAG 1655
Query 5769 ACATTCGACTATACCATCGGACCAAATCTATATGTCTGATCCGCACATATTGGTCGCACT 5828
||| ||||| || || || ||||| ||||| ||| ||||| ||||| | ||||| |
Sbjct 1656 ACACTCGACCATCCCGTCAGACCAGATCTACTCGTCGGATCCTCACATTCTCGTCGCCTT 1715
Query 5829 CTCAAGGCACACACAGAGCCTGGTTTATTACACCAGACTCAAAGATAAGGTTTGTGACGT 5888
|| | ||||| ||||| ||| | |||||||| ||||| || || ||||||||||| ||
Sbjct 1716 ATCGCGACACACCCAGAGTCTGATATATTACACTAGACTGAAGGACAAGGTTTGTGAAGT 1775
Query 5889 CATCGATAAGGCCGTTGGAGAACTGGAGAAGGTTCAGCAACGCAGCATGTCCGGTGGTGG 5948
||| | || | || | |||| ||||| | || ||| ||||||||||||||
Sbjct 1776 GATCTCGAGAGCTACAGAAGCATTGGAAAAGGTCAACCACCGCTCTATGTCCGGTGGTGG 1835
Query 5949 TCCGTCGTGCGCAATGATCATGAACACCAATTACGCGGGACCAAAGTACACAAAGATACT 6008
|| ||||| | ||||| ||||||||||| || | || || || || | ||||| ||
Sbjct 1836 ACCTTCGTGTGTCATGATGATGAACACCAAATATGACGGTCCGAATTATTCGAAGATCCT 1895
Query 6009 CGAATACGGGTTAGCCTATGATGTCCCTCGTTATAGGTTGTTCAAATCCGTGGCATCGAT 6068
| |||||||| |||||||| || ||||| || ||||||||||| | || ||| |
Sbjct 1896 ACCCTTTGGGTTAGCGTATGATGTACCACGTTACCGGCTGTTCAAATCCATCGCGTCGGT 1955
Query 6069 CCTACGACCGAGACACACCAGAATCAGGTTGAACAACGTTACACCGCATGTTGAGATTTT 6128
|| |||| | | || | ||||| |||| |||| || || || || || | |
Sbjct 1956 TCTGAGACCTCGCTATACGAAGATCAGACTGAATCACGTAACGCCTCAGGTGCAGGCTCT 2015
Query 6129 GCAGCAGTGGTATGATACCATTCTGCCGACAATCAGCACCGCCGACAGAACGTTTGATAA 6188
||| || ||||||||| ||||||| || |||| || | ||| | || | || ||
Sbjct 2016 GCAACAATGGTATGATGCCATTCTACCCGAGGTCAGTACTGTGGACCGGACATACGACAA 2075
Query 6189 CCATATGATACATAACGACCCGTTGTCCGTGTCAATTGCTGGAAAAGTGACCCTGGATCT 6248
|| ||||| || | || || | ||||| || || || || | || || || || ||
Sbjct 2076 TCACATGATCCACGATGATCCACTATCCGTTTCGATAGCAGGTAGTGTCACGCTTGACCT 2135
Query 6249 GTCGAAACTGAAATACGACGGTCGTAAATTTGACAACAAGAGACCGGTTCTGCGTACAGG 6308
||| ||| ||| | ||| || || || |||||||| | | | ||||| || | ||| |
Sbjct 2136 GTCCAAAATGAGACCCGAAGGACGCAAGTTTGACAATATGCGCCCGGTGCTTAGAACAAG 2195
Query 6309 AATTGGCTTGGAGCGTATTAGATCCCAGCGTGAATCTCTACTAGCCTACATCAAACGCAA 6368
|| || |||||| | || || || ||||| || || || || ||||| ||||| | ||
Sbjct 2196 CATGGGGTTGGAGAGGATCAGGTCTCAGCGAGAGTCGCTGCTTGCCTATATCAAGAGGAA 2255
Query 6369 CGACGCGGTCCCGATCCCGCTCGAACCAGTCGACCCAACGTACGTCGTGAATCTCATGAT 6428
|| || || || |||||| |||||||| | ||||||| ||| |||||| | | |||||
Sbjct 2256 TGATGCCGTTCCCATCCCGATCGAACCAATTGACCCAAAGTATGTCGTGGACATGATGAT 2315
Query 6429 GGAGAAGTTCCAAGGCTACTTCGACCCGGAGAGACTTGAAGGTGTTCTCGGTGTACCCTT 6488
||| |||||||| || || |||||||| || | ||| || || ||||| || ||
Sbjct 2316 GGAAAAGTTCCAGGGGTATTTCGACCCTGAAAAACTCAGTGGAGTGCTCGGGACCCCATT 2375
Query 6489 AACCCTCAATTCTGAGTCAATGACCAAGTGGGCATTGGCCCAGGATAAGAGCATAGACAC 6548
||| || | ||| || || ||| |||||||| |||| ||||| || ||| ||||
Sbjct 2376 AACACTGAGTTCAGAATCCATGCATAAGTGGGCGATGGCTCAGGACAAATCCATCGACAT 2435
Query 6549 GACAGTCGATCAGTATTTGCACGAGCAGGATCTGAGCAGATACGAATTCATGA 6601
|| || || ||||| || ||||| | ||||| | | ||||| |||||||
Sbjct 2436 GAGCGTGGAACAGTACCTGAACGAGAACGATCTTGGTAAGTACGAGTTCATGA 2488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 32115087998240
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