Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq45 150 7e-34 seq32 129 2e-27 seq987 116 2e-23 >seq45 Length=1954 Score = 150 bits (166), Expect = 7e-34 Identities = 121/146 (83%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| ||||||||||| | ||||||||||||||| Sbjct 1064 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAAT 1123 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| | ||||||||||||| ||||||| |||| ||||| ||||||||||| || | Sbjct 1124 ATTGCCATGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAAT 1183 Query 160 AGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||| ||| || |||||||| || Sbjct 1184 AGAGAGTCAAATAGTACGTGAAACTG 1209 Score = 102 bits (112), Expect = 3e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || |||||||||||||||||||||||| ||| ||| |||| ||| |||||| ||| || Sbjct 1851 TGTGACCCGAAAGATGGTGAACTATGCTTGATCAGGTCGAAGTCAGGGGAAACCCTGATG 1910 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 |||| || ||| ||||| ||||||||||||| |||| | ||| Sbjct 1911 GAGGACCGAAGCAATTCTGACGTGCAAATCGATTGTCAGAGTTG 1954 >seq32 Length=2000 Score = 129 bits (142), Expect = 2e-27 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| ||||||||||| | ||||||||||||||| Sbjct 841 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAAT 782 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | ||||||||||| ||||||| |||| ||||| ||||||||||| || | Sbjct 781 ACCACCATGAGACCGATAGAAGACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAAT 722 Query 160 AGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||| ||| || |||||||| || Sbjct 721 AGAGAGTCAAAGAGTACGTGAAACTG 696 >seq987 Length=62723 Score = 116 bits (128), Expect = 2e-23 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || |||||||||||||||||||||||| ||| ||| |||| ||| |||||| ||| || Sbjct 58600 TGTGACCCGAAAGATGGTGAACTATGCTTGATCAGGTCGAAGTCAGGGGAAACCCTGATG 58659 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || ||| ||||| ||||||||||||| |||| | ||| | |||||||||| Sbjct 58660 GAGGACCGAAGCAATTCTGACGTGCAAATCGATTGTCAGAGTTGAGCATAGGGGCGA 58716 Score = 75.2 bits (82), Expect = 5e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||| ||| |||||| ||| |||||| || ||| ||||| ||||||||||||| |||| Sbjct 48401 GAAGTCAGGGGAAACCCTGATGGAGGACCGAAGCAATTCTGACGTGCAAATCGATTGTCA 48460 Query 665 AATTTGGGTATAGGGGCGA 683 | ||| | |||||||||| Sbjct 48461 GAGTTGAGCATAGGGGCGA 48479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079970141600