Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq987 315 2e-83 seq971 248 3e-63 >seq987 Length=62723 Score = 315 bits (348), Expect = 2e-83 Identities = 365/481 (76%), Gaps = 26/481 (5%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 13059 TATTTCTCGTCACTACCTCCCCGTACTGGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 13000 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 12999 TTGGATGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 12940 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||||| |||||||||| || | || |||||||| | ||||||||||||||| ||||| Sbjct 12939 CCCGTTGTAACCATGGTAGTCCTCGATACTACCATCAATAGTTGATAGGGCAGACATTTG 12880 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGAT-----TCGTTA-----AGTTATTATGAA 272 || | ||| ||| |||| || | |||| || ||| | || | || Sbjct 12879 CGAGATCTGTCGTCGGTGCAAGACCGTACGATCGGCATCATTATCCAGACTTCAACTCAA 12820 Query 273 TCACCAAGGAGCCCCGAAG---GGCG-TTGGTTTTTTATCTAATAAATACACCCCTTC-- 326 | || | | | | ||| | ||| |||| ||| ||||||| | |||| | | Sbjct 12819 TGAC--ACGGGGCACGAGGCCCCGCGATTGG---TTTGACTAATAAGTGCACCAGTCCCG 12765 Query 327 CGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT-AGTA 385 ||| ||| || | | ||||||||||||||| || || |||| |||||||| || | | Sbjct 12764 CGAGGTCCCGGCATGTTGCATGTATTAGCTCTGGATTTTCCACAGTTATCCAAGTAACTT 12705 Query 386 AGGT-ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC-TGTATA 443 |||| | ||| | || ||| ||| | || |||||| | || ||||||| | || Sbjct 12704 AGGTGATGATCTTGTGAATTATAGCTGTTATACTGAGCCTTATGCGGTTTCACATTCATT 12645 Query 444 GATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | || || |||||||||||||||||||||| ||||||||||||| ||| | |||||| | Sbjct 12644 TA-TGTTTGTACTTAGACATGCATGGCTTAACCTTTGAGACAAGCGTAT-ATTACTGGTA 12587 Query 504 G 504 | Sbjct 12586 G 12586 >seq971 Length=64211 Score = 248 bits (274), Expect = 3e-63 Identities = 166/185 (90%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 36317 TATTTCTCGTCACTACCTCCCCGTACTGGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 36258 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 36257 TTGGATGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 36198 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | |||||||||| || ||| |||||||| | ||||||||||||||| ||||| Sbjct 36197 CCCGTCGCAACCATGGTAGTCCTCTACACTACCATCAATAGTTGATAGGGCAGACATTTG 36138 Query 223 AATGA 227 || || Sbjct 36137 AAAGA 36133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510378975232