Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq872 354 6e-93 seq628 168 5e-37 >seq872 Length=887634 Score = 354 bits (392), Expect = 6e-93 Identities = 1201/1849 (65%), Gaps = 45/1849 (2%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || ||||| || ||||| ||||| | |||| ||||| | || ||||||||||| ||| Sbjct 220943 TCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCCGTC 221002 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| || |||||||| ||||| | | || |||| ||||||||| Sbjct 221003 TTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGCTCG 221062 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA-CCACGATCTGCAGCCAT 65256 ||||| || || || || || || ||||||||| |||| || ||||| || ||||| Sbjct 221063 GCCACGTGTATGTTAAATGATTGTGACTGATCGATA-AACGCTCCCCGATCGGCCGCCAT 221121 Query 65257 GTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | ||| | | || |||| |||||||| || |||||||||||| || | || Sbjct 221122 TTTGATGG-ATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCCT 221180 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCATC 65374 |||| || ||||||| || | || || | | ||| | || || ||| Sbjct 221181 TTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGA-TGTTGTTCTTCAT- 221238 Query 65375 GACTCTGA--CCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | | || ||||||||||| | | |||| ||| | || ||| | || | || | Sbjct 221239 GTCAA-GATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCT 221297 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||| || || ||||| ||| || | ||| |||||| || || ||||| | Sbjct 221298 GGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACT 221357 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 || ||||||| | ||||| || || || || || ||||| || || | || | |||| Sbjct 221358 CATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGT 221417 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 | || | |||| | || |||| || | ||| || ||||||||||| | | Sbjct 221418 TACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACA---GATC-- 221472 Query 65613 CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 ||||| || | |||||| || | || ||| || | || | || |||| Sbjct 221473 CGTCGGT-TCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTT 221531 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTG--GCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730 | | ||||| || ||| | || || | || ||||| | || ||||| | Sbjct 221532 CATACGTCTCGTATGGACCGTCC--CGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCC 221589 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 | | || ||||| || || || || |||| || | | ||||| ||||| ||||| || Sbjct 221590 ATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGG 221649 Query 65791 CATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849 ||| | ||| | | || | ||||||| || || || || ||||||||||| | | Sbjct 221650 -ATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGT 221708 Query 65850 GACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGAT 65909 | |||| |||||||| ||||||| || || || ||||| || || ||||| || | Sbjct 221709 GGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGT 221768 Query 65910 TCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAG 65969 ||| ||||||||| || | | ||| | || | | ||||||| | Sbjct 221769 TCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATC----------G 221818 Query 65970 GACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGA 66029 ||| | | |||| || ||| || || || | || || || ||||| | Sbjct 221819 TACGTCC-----TATCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAA 221873 Query 66030 CAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTA 66089 | || || || || | | ||||| ||||| || ||||||| ||| || | Sbjct 221874 CCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAA 221933 Query 66090 TGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACG 66149 ||||||| | ||||| || || || ||||| ||||||||||||||||||| ||| |||| Sbjct 221934 TGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACG 221993 Query 66150 GAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG 66209 | ||| || || || || || |||||||| ||| ||| | | | ||||||||||| Sbjct 221994 GTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCT 222053 Query 66210 TACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCC 66269 || | | ||| | ||||| ||| || ||||| |||||||| Sbjct 222054 GGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCC 222113 Query 66270 ATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTT 66329 | || |||| || ||||| | ||| || ||||| || ||| | | | | Sbjct 222114 AGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCT 222173 Query 66330 CTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTT 66389 | || || ||| || ||||| || ||||| | |||||| || | |||||||| || Sbjct 222174 CCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCA 222233 Query 66390 GCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATG 66449 |||||| ||||| ||||| || || || ||||| || | || | ||||| | Sbjct 222234 CCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACG 222293 Query 66450 GTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAG 66509 |||| ||||||||||| || | ||| || ||| |||||| || || ||||| || | Sbjct 222294 GTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGG 222353 Query 66510 CGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGT 66569 | ||||||| | || |||| ||| || || | |||||| || | ||||| ||||| Sbjct 222354 CCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCG 222413 Query 66570 CGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCT 66629 |||| | ||| || || ||| ||| || ||||| ||||| || || || | | Sbjct 222414 AGATGTACGTACCTTTCGCGCGAATACAGTGCACGTTCAGCCCAATTCCGCCAGCAGATT 222473 Query 66630 TCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGA 66689 | || || ||||| | || || | | || || |||||| ||| || | Sbjct 222474 TTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACA 222533 Query 66690 TGGTCAGGAGGTAGCATGA--ACTAAGTTGGG--GTTTGGGTGTGGCGGCCGAGAAGAGG 66745 |||| || | | | || || || || | || ||| | || || |||| || | | Sbjct 222534 TGGTGAGCAAGAAACAGGACGAC-AACTGCGGACGTT---GCGTAGCCGCCGCAAACATG 222589 Query 66746 GTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCA 66805 || |||| || || |||||||| | || | |||||| |||||||| | ||| Sbjct 222590 GTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCA 222649 Query 66806 TCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCG 66865 || |||| ||| |||||||| |||| ||| ||||||| | | || || || || Sbjct 222650 TCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCA 222709 Query 66866 ACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGA 66914 || | | ||||||| | || |||||||| || || | || |||| Sbjct 222710 ACGATCTTGCCCTTGATCTTCAACAAGTAGGACCGCTCTAAAGTTTTGA 222758 >seq628 Length=1452984 Score = 168 bits (186), Expect = 5e-37 Identities = 200/268 (75%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 ||||||||||||| |||||||| ||||| ||||| ||| ||||||| |||||||| |||| Sbjct 708794 AGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACT 708735 Query 61166 GGGAG-CGTTTAT--CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 |||| |||| | |||||| ||| || || || || || | || ||||||| Sbjct 708734 GGGATTCGTTGAAACCGAGCG---AACGCCACTTTATCTCGCACGTACTTGCCTTCTTTG 708678 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 |||| || || || ||||| || || || | | ||||||||| |||||||| || | Sbjct 708677 CCGCATCCGATGGCATCGTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTACAGG 708618 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 | |||| || || ||||| |||||||| || || || ||||| ||||| ||| |||| Sbjct 708617 TAACGGAAGCTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGA 708558 Query 61343 TGTACAGTGTTCTCATCGATACGTACAT 61370 ||||| | || ||||| |||||||| Sbjct 708557 TGTACTCACTGCTAATCGACACGTACAT 708530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561255258880