Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028484.1 Length=11343 Score E Sequences producing significant alignments: (Bits) Value seq778 154 1e-33 >seq778 Length=78982 Score = 154 bits (170), Expect = 1e-33 Identities = 285/411 (69%), Gaps = 8/411 (2%) Strand=Plus/Minus Query 6560 ATGATTTGGTAATTGGATTAAAGGCAAAAGAGAGAGAGATTAAGTGGAAAGGACGATTCT 6619 |||| |||| |||||||| | |||||| ||||| || | || ||||| || |||| Sbjct 32522 ATGAACTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCT 32463 Query 6620 TTGCACTCATGAGTTGGCGCCTT-CGCGAGTACTTTGTATTTACTGAATATTTAATCAAG 6678 |||| || ||||||||| || || || || ||||| || | ||||| || || || ||| Sbjct 32462 TTGCCCTGATGAGTTGG-GCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAG 32404 Query 6679 AAGAATGTGATCCCACTATTCAAAGGATTGACCATGGCGGATGATCAAACGACTTTGATC 6738 ||| | | |||| ||| || ||| || || ||||| |||||| | | || || || Sbjct 32403 AAGCACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTC 32344 Query 6739 AAGAAGATGATTCAGAACA-CAAGTGGACAAGGAGGAAATGATTACAAGCATATAACGTT 6797 || || ||||| || | || | ||| ||| | | ||||| | | | || | Sbjct 32343 AATAAAATGATGCA-AGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAAT 32285 Query 6798 TGCGAATCACATCGATTACGAAAAGTGGAACAATTTCCAAAGATATGAATCAACAGCTCC 6857 ||| || ||| | || || |||||||||||||||| || ||| ||| ||| | ||| Sbjct 32284 TGCTAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCC 32225 Query 6858 --TGTTTTCCGGGTGATTGGACAATTTTTTGGTCTACCGAACTTATTTGTGCGAACGCAT 6915 | |||||| || || ||| |||| ||||| | || || || ||||| |||| ||| Sbjct 32224 GGTATTTTCC--GTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCAT 32167 Query 6916 GAATTCTTTGAAAAAGCACTGGTGTACTATCGAGACAGACCTGACCTGATG 6966 || ||||| ||||||||| | || || || ||||||||| | ||| Sbjct 32166 GAGTTCTTCTCAAAAGCACTATTTTATTACAAGGATAGACCTGACTTAATG 32116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36181833383616