Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq1360 105 9e-18 >seq1360 Length=640366 Score = 105 bits (116), Expect = 9e-18 Identities = 341/524 (65%), Gaps = 4/524 (1%) Strand=Plus/Plus Query 162315 TGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTGAATA 162374 |||||| || || || | || || || ||||| ||| | || || ||| | ||||| Sbjct 380395 TGAAATCTACAATCTGGCCGCCCAAAGCCACGTCAAGATATCGTTCGATTTGAGCGAATA 380454 Query 162375 CACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTTGG 162434 || || || || || | || || ||| | ||||||| ||| ||||| | || Sbjct 380455 TACGGCGGAGGTAGATGCTGTCGGTACACTACGTTTGCTAGATGCCATCCGTACCGTCGG 380514 Query 162435 TATGGAATCATAC-GTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTC 162493 |||| | || || | |||||||||| ||| ||||| || || || Sbjct 380515 GCAGGAAA-AGACTGTCCGCTTCTACCAAGCTTCCACGTCGGAGCTGTACGGAAAGGTGG 380573 Query 162494 AGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTA 162553 |||||||| ||||| |||| ||||| | |||||||| || || || | ||| | Sbjct 380574 CCGAGACACCACAGAACGAAAAGACTCCGTTCTATCCACGCTCACCGTACGCTTGTGCGA 380633 Query 162554 AACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTA 162613 | | || || | |||||| | | |||||| | ||| || ||||| |||| | Sbjct 380634 AGATGTACGGATACTGGATTGTGATAAACTATCGCGAAGCGTACGACATGTTCGCCTGCA 380693 Query 162614 GCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGA 162673 ||| ||||| || || ||||| | ||| | ||||| | || || || ||||| | Sbjct 380694 ACGGGATTCTCTTTAACCACGAGTCACCGCGCCGGGGAGAAAATTTTGTAACGCGCAAAA 380753 Query 162674 TCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAA-AGTGATCTACAACTTGGAAAC 162732 | ||| | || | |||| | || | ||| ||| |||| | || || || Sbjct 380754 TTACCCGCTCGGTGGCAAAAATTTCGCTCGGCCAGCAAGAGT-ATCTGGAGCTGGGTAAT 380812 Query 162733 CTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATG 162792 ||| | | |||||||||||| ||||| ||||| ||||| || || |||||| | ||| Sbjct 380813 CTCGACTCGAAACGTGACTGGGGCCACGCAAAAGATTACGTCGAAGCGATGTGGCTTATG 380872 Query 162793 CTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 | ||||| || || || || || | ||| || || || ||||| Sbjct 380873 ATGCAGCAGGACAAACCGGAAGACTTTGTAATTGCGACGGGTGA 380916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691447168609920