Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_031927.1
Length=216121
Score E
Sequences producing significant alignments: (Bits) Value
seq1360 105 9e-18
>seq1360
Length=640366
Score = 105 bits (116), Expect = 9e-18
Identities = 341/524 (65%), Gaps = 4/524 (1%)
Strand=Plus/Plus
Query 162315 TGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTGAATA 162374
|||||| || || || | || || || ||||| ||| | || || ||| | |||||
Sbjct 380395 TGAAATCTACAATCTGGCCGCCCAAAGCCACGTCAAGATATCGTTCGATTTGAGCGAATA 380454
Query 162375 CACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTTGG 162434
|| || || || || | || || ||| | ||||||| ||| ||||| | ||
Sbjct 380455 TACGGCGGAGGTAGATGCTGTCGGTACACTACGTTTGCTAGATGCCATCCGTACCGTCGG 380514
Query 162435 TATGGAATCATAC-GTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTC 162493
|||| | || || | |||||||||| ||| ||||| || || ||
Sbjct 380515 GCAGGAAA-AGACTGTCCGCTTCTACCAAGCTTCCACGTCGGAGCTGTACGGAAAGGTGG 380573
Query 162494 AGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTA 162553
|||||||| ||||| |||| ||||| | |||||||| || || || | ||| |
Sbjct 380574 CCGAGACACCACAGAACGAAAAGACTCCGTTCTATCCACGCTCACCGTACGCTTGTGCGA 380633
Query 162554 AACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTA 162613
| | || || | |||||| | | |||||| | ||| || ||||| |||| |
Sbjct 380634 AGATGTACGGATACTGGATTGTGATAAACTATCGCGAAGCGTACGACATGTTCGCCTGCA 380693
Query 162614 GCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGA 162673
||| ||||| || || ||||| | ||| | ||||| | || || || ||||| |
Sbjct 380694 ACGGGATTCTCTTTAACCACGAGTCACCGCGCCGGGGAGAAAATTTTGTAACGCGCAAAA 380753
Query 162674 TCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAA-AGTGATCTACAACTTGGAAAC 162732
| ||| | || | |||| | || | ||| ||| |||| | || || ||
Sbjct 380754 TTACCCGCTCGGTGGCAAAAATTTCGCTCGGCCAGCAAGAGT-ATCTGGAGCTGGGTAAT 380812
Query 162733 CTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATG 162792
||| | | |||||||||||| ||||| ||||| ||||| || || |||||| | |||
Sbjct 380813 CTCGACTCGAAACGTGACTGGGGCCACGCAAAAGATTACGTCGAAGCGATGTGGCTTATG 380872
Query 162793 CTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836
| ||||| || || || || || | ||| || || || |||||
Sbjct 380873 ATGCAGCAGGACAAACCGGAAGACTTTGTAATTGCGACGGGTGA 380916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 691447168609920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |