Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_032907.1 Length=13109 Score E Sequences producing significant alignments: (Bits) Value seq778 141 8e-30 >seq778 Length=78982 Score = 141 bits (156), Expect = 8e-30 Identities = 348/521 (67%), Gaps = 10/521 (2%) Strand=Plus/Minus Query 8185 CTTGTAATCGGGCTGAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTCGCT 8244 || || || || |||| | |||||| || ||| | ||| | |||||| ||||| || Sbjct 32517 CTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCC 32458 Query 8245 CTTATGTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTACAT 8304 || ||| ||| | ||||||||||||| || || || || || || || || Sbjct 32457 CTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCAC 32398 Query 8305 TTCGTCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaa 8364 |||||||| | | | | || ||||||||||| |||||| |||||||| || || ||| Sbjct 32397 TTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATAAA 32338 Query 8365 aTGCTCGATACATCTAATGGACAAGGGTTAGACGTTTACGACTATATCACAATGGCAAAT 8424 ||| | | ||||| ||| ||| | | | ||| ||| | | ||||| || || Sbjct 32337 ATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAAC 32278 Query 8425 CATATAGATTATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTC 8484 || | || ||||| || ||||| || |||| |||||||| ||||| |||| || || Sbjct 32277 CACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTT 32218 Query 8485 ACTGTCATGGGTCAGTTTCTAGGATATCCAAGCCTCATAACAAGAACACATGAGTTCTTT 8544 | || ||||| | || | |||| || | | | ||||| ||||||||||| Sbjct 32217 TCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTTC 32158 Query 8545 GAAAAAAGCTTGATCTATTACAACAACAGAACAGACCTAATGTATGTAAGAGATGG-GGT 8603 |||| | | |||||||| | ||| | ||| ||||| || | | || | | Sbjct 32157 TCAAAAGCACTATTTTATTACAAGGATAGACCTGACTTAATG---GTGATCAACGGAGAT 32101 Query 8604 TGTTTTGAACAAAGATG--ATGACACGCCTGTCTGTTGGAATGGTCAGGCCGGAGGACTA 8661 || | || ||| || | | | | | | || ||||| || |||||||||||| Sbjct 32100 AGTCTAGA--AAACTTGCCAGGGGA-GTTTATTTGCTGGAAAGGCCAGGCCGGAGGATGT 32044 Query 8662 GAGGGGCTGAGACAAAAAGGCTGGAGTATAGTCAACTTACT 8702 |||||||| |||||||||| || || | ||||| ||||| Sbjct 32043 GAGGGGCTTCGACAAAAAGGGTGAAGCTTGGTCAA-TTACT 32004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41829726739712