Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq778 82.4 6e-12 >seq778 Length=78982 Score = 82.4 bits (90), Expect = 6e-12 Identities = 256/389 (66%), Gaps = 8/389 (2%) Strand=Plus/Minus Query 7996 ATGATTTGGTCATCGGACTGAAAGAAAAGGAGCGGGAATTGAAAACAGCAGGACGTTTCT 8055 |||| ||||||| ||| ||| | ||||||| ||||||||||| | ||| || |||| Sbjct 32522 ATGAACTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCT 32463 Query 8056 TTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAATATCTCATAAA-A 8114 || | | ||| |||| | |||| || || || |||||||| || | ||||| | Sbjct 32462 TTGCCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGA 32403 Query 8115 ACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTTAGTTACTGTTATG 8174 | | || ||||| | | || ||||| ||||||||||| | || || | Sbjct 32402 AGCACTT-CGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTC 32344 Query 8175 AGAAAAATGCTCGAAACATCATCTGGACAAGGATTGGATAATTATGATGTGAT--CTATT 8232 | |||||| | || |||| ||||| ||| | ||||||| | | | | ||| Sbjct 32343 AATAAAATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATT 32284 Query 8233 TGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAGCCTCGACTGGTC 8292 || || ||| | || ||||| || ||||| || | || || || | | || || Sbjct 32283 --GCTAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATC 32226 Query 8293 CTGTATTTAAGGTGATGGGACAATTCTTGGGTTACCCTAATTTAATTTACAGAACACACG 8352 | |||||| || |||||| ||||||| || | || ||||| || ||||| || | Sbjct 32225 CGGTATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATG 32166 Query 8353 AATTTTTTGAGAAAAGC-CTGATTTATTA 8380 | || || |||||| || ||||||| Sbjct 32165 -AGTTCTTCTCAAAAGCACTATTTTATTA 32138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41484150348032