Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_033701.1 Length=11743 Score E Sequences producing significant alignments: (Bits) Value seq778 147 2e-31 >seq778 Length=78982 Score = 147 bits (162), Expect = 2e-31 Identities = 248/359 (69%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 6700 CTGGTCATTGGACTGAAGGGAAAAGAGAGAGAAGTTAAAAGGATTGGTCGAtttttttCA 6759 |||||||||||| ||| || ||| ||||| ||| | ||| | ||||| || ||| | Sbjct 32517 CTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCC 32458 Query 6760 CTAATGTCTTGGGAACTACGAATGTACTTTGTAGTAACGGAATACTTGATTAAAAAGTTT 6819 || ||| ||||| | ||||| ||||| || |||| || |||||||| || ||| Sbjct 32457 CTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCAC 32398 Query 6820 TTTGTACCTTTGTTCTCAGGTTTAACAATGGCCGACGATTACAATTCAGTAATTAAGAAA 6879 || || || || | | |||||||||| ||||| || |||||||| |||| | || ||| Sbjct 32397 TTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATAAA 32338 Query 6880 ATGTTGGACCGGGCGACAGGTCAAGGTGAATCTGATTACCAGTATATAACATTTGCAAAT 6939 ||| || | | | |||||| | ||||| | | | ||| |||| || Sbjct 32337 ATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAAC 32278 Query 6940 CATTTTGACTATTCGAAATGGAACAATACTCAACGAGGGGCTGCCAATGACCCAGTCTTC 6999 || |||||||| || ||||||||| ||| |||| | || ||||| || || || Sbjct 32277 CACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTT 32218 Query 7000 CTTGTCATGGGTAAATTTTTAGGACTACCGAAACTCTTTGTAAGAACCCACGAGTTTTT 7058 || ||||| ||||| || ||| | || || | ||||| |||||||| ||||| || Sbjct 32217 TCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTT 32159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37461813338816