Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_033731.1 Length=12548 Score E Sequences producing significant alignments: (Bits) Value seq778 109 4e-20 >seq778 Length=78982 Score = 109 bits (120), Expect = 4e-20 Identities = 258/387 (67%), Gaps = 2/387 (1%) Strand=Plus/Minus Query 6242 AGAGCTAAAGAAAGAGAATTAAAATTAACAGGGAGGTTTTTTGCTTTAATGTCTTGGGAG 6301 || || || || || ||||| ||| | ||| |||| ||||| | ||| ||||| Sbjct 32502 AGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCCTGATGAGTTGGGCA 32443 Query 6302 TTGAGAGAGTATTTTGTTATAACTGAGTGGCTCATAAAGAAGTATTTCGTTCCGTTACTA 6361 || |||| || || || |||||||||| | ||||||||| | ||||| |||||| Sbjct 32442 TTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTCGTCCCGTTATGC 32383 Query 6362 AGAGACTTAACAATGGCAGACGACTTGAATGATGTCATAAGTAAAATGTTGTCTAGTA-C 6420 | || ||||| ||||| || || | || || | | ||||||| || | || | | Sbjct 32382 ACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATAAAATGATG-CAAGCATC 32324 Query 6421 ATCAGGACAAGGGTTGGATGACTACTCAGTAGTATCTATTTCTAACCACTTAGATTACGA 6480 || || ||| | || || | || | ||| |||||||| | || || || Sbjct 32323 TTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAACCACGTTGACTATGA 32264 Query 6481 GAAATGGAACAATCACCAAAGGAAGGAATCAAATGATCCTGTATTCAGAGTGATGGGTCA 6540 || ||||||||| | || || ||| |||||||||| ||||| || ||||| | Sbjct 32263 AAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTTTCCGTTATGGGAAA 32204 Query 6541 ATTTTTGGGAAAGCCTAACTTATTCACTAGGACACATGAGTTTTTCGAGAAATCGTTGAT 6600 ||| || ||| ||| || || || ||| || |||||||| ||| ||| | | | Sbjct 32203 ATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTTCTCAAAAGCACTATT 32144 Query 6601 TTATTATGTTGATAGACCTGATTTGAT 6627 |||||| ||||||||||| || || Sbjct 32143 TTATTACAAGGATAGACCTGACTTAAT 32117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40037772998656