Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq1440 96.9 3e-16 seq9517 91.5 1e-14 seq8251 91.5 1e-14 seq1814 91.5 1e-14 >seq1440 Length=90230 Score = 96.9 bits (106), Expect = 3e-16 Identities = 255/381 (67%), Gaps = 9/381 (2%) Strand=Plus/Plus Query 7983 GGATTATCCTGGGATGATTTGGTCATCGGACTGAAAGAAAAGGAGCGGGAATTGAAAACA 8042 ||| ||||| || |||| || || ||||| |||| || ||| || || ||||| | Sbjct 51962 GGACTATCCAGGAATGAATTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTA 52018 Query 8043 GCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAA 8102 |||| | || ||| | | ||| |||| || | || || ||||| ||||| || Sbjct 52019 AAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAG 52078 Query 8103 TATCTCATAAA-AACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTT 8161 ||| | || || || | ||| ||| ||||| | | ||||||||||||||||| |||| Sbjct 52079 TATTTGATTAAGAAGCATTT-TGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTA 52137 Query 8162 AGTTACTGTTATGAGAAAAATGCTCGAAACATCATCTGGACA-AGGATTGGATAATTATG 8220 || || | | || ||| | || | ||||||||||| | | | | | ||||| Sbjct 52138 GAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACT-CACAGTTATG 52196 Query 8221 ATGTGATCTATTTGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAG 8280 ||| | | | || ||||| | ||||||||||| ||||| || | ||| || | Sbjct 52197 ATGAGGTGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTG 52256 Query 8281 CCTCGACTGGTCCTGTATTTAAGGTGATGGGACAATTCTTGGGTTACCCTAATTTAATTT 8340 | || ||| || || || ||||| | ||| || || | |||||||| ||| Sbjct 52257 AGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTT-GTTT 52315 Query 8341 AC-AGAACACACGAATTTTTT 8360 || |||||||| ||||| ||| Sbjct 52316 ACGAGAACACATGAATTCTTT 52336 >seq9517 Length=2557 Score = 91.5 bits (100), Expect = 1e-14 Identities = 254/381 (67%), Gaps = 9/381 (2%) Strand=Plus/Plus Query 7983 GGATTATCCTGGGATGATTTGGTCATCGGACTGAAAGAAAAGGAGCGGGAATTGAAAACA 8042 ||| ||||| || |||| || || ||||| |||| || ||| || || ||||| | Sbjct 543 GGACTATCCAGGAATGAGTTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTA 599 Query 8043 GCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAA 8102 |||| | || ||| | | ||| |||| || | || || ||||| ||||| || Sbjct 600 AAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAG 659 Query 8103 TATCTCATAAA-AACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTT 8161 ||| | || || || | ||| ||| ||||| | | ||||||||||||||||| |||| Sbjct 660 TATTTGATTAAGAAGCATTT-TGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTA 718 Query 8162 AGTTACTGTTATGAGAAAAATGCTCGAAACATCATCTGGACA-AGGATTGGATAATTATG 8220 || || | | || ||| | || | ||||||||||| | | | | | ||||| Sbjct 719 CAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACT-CAGAGTTATG 777 Query 8221 ATGTGATCTATTTGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAG 8280 ||| | | || ||||| | ||||||||||| ||||| || | ||| || | Sbjct 778 ATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTG 837 Query 8281 CCTCGACTGGTCCTGTATTTAAGGTGATGGGACAATTCTTGGGTTACCCTAATTTAATTT 8340 | || ||| || || || ||||| | ||| || || | |||||||| ||| Sbjct 838 AGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTT-GTTT 896 Query 8341 AC-AGAACACACGAATTTTTT 8360 || |||||||| ||||| ||| Sbjct 897 ACGAGAACACATGAATTCTTT 917 >seq8251 Length=2688 Score = 91.5 bits (100), Expect = 1e-14 Identities = 254/381 (67%), Gaps = 9/381 (2%) Strand=Plus/Plus Query 7983 GGATTATCCTGGGATGATTTGGTCATCGGACTGAAAGAAAAGGAGCGGGAATTGAAAACA 8042 ||| ||||| || |||| || || ||||| |||| || ||| || || ||||| | Sbjct 218 GGACTATCCAGGAATGAGTTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTA 274 Query 8043 GCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAA 8102 |||| | || ||| | | ||| |||| || | || || ||||| ||||| || Sbjct 275 AAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAG 334 Query 8103 TATCTCATAAA-AACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTT 8161 ||| | || || || | ||| ||| ||||| | | ||||||||||||||||| |||| Sbjct 335 TATTTGATTAAGAAGCATTT-TGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTA 393 Query 8162 AGTTACTGTTATGAGAAAAATGCTCGAAACATCATCTGGACA-AGGATTGGATAATTATG 8220 || || | | || ||| | || | ||||||||||| | | | | | ||||| Sbjct 394 GAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACT-CAGAGTTATG 452 Query 8221 ATGTGATCTATTTGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAG 8280 ||| | | || ||||| | ||||||||||| ||||| || | ||| || | Sbjct 453 ATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTG 512 Query 8281 CCTCGACTGGTCCTGTATTTAAGGTGATGGGACAATTCTTGGGTTACCCTAATTTAATTT 8340 | || ||| || || || ||||| | ||| || || | |||||||| ||| Sbjct 513 AGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTT-GTTT 571 Query 8341 AC-AGAACACACGAATTTTTT 8360 || |||||||| ||||| ||| Sbjct 572 ACGAGAACACATGAATTCTTT 592 >seq1814 Length=63972 Score = 91.5 bits (100), Expect = 1e-14 Identities = 254/381 (67%), Gaps = 9/381 (2%) Strand=Plus/Plus Query 7983 GGATTATCCTGGGATGATTTGGTCATCGGACTGAAAGAAAAGGAGCGGGAATTGAAAACA 8042 ||| ||||| || |||| || || ||||| |||| || ||| || || ||||| | Sbjct 1624 GGACTATCCAGGAATGAGTTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTA 1680 Query 8043 GCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAA 8102 |||| | || ||| | | ||| |||| || | || || ||||| ||||| || Sbjct 1681 AAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAG 1740 Query 8103 TATCTCATAAA-AACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTT 8161 ||| | || || || | ||| ||| ||||| | | ||||||||||||||||| |||| Sbjct 1741 TATTTGATTAAGAAGCATTT-TGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTA 1799 Query 8162 AGTTACTGTTATGAGAAAAATGCTCGAAACATCATCTGGACA-AGGATTGGATAATTATG 8220 || || | | || ||| | || | ||||||||||| | | | | | ||||| Sbjct 1800 GAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACT-CAGAGTTATG 1858 Query 8221 ATGTGATCTATTTGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAG 8280 ||| | | || ||||| | ||||||||||| ||||| || | ||| || | Sbjct 1859 ATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTG 1918 Query 8281 CCTCGACTGGTCCTGTATTTAAGGTGATGGGACAATTCTTGGGTTACCCTAATTTAATTT 8340 | || ||| || || || ||||| | ||| || || | |||||||| ||| Sbjct 1919 AGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTT-GTTT 1977 Query 8341 AC-AGAACACACGAATTTTTT 8360 || |||||||| ||||| ||| Sbjct 1978 ACGAGAACACATGAATTCTTT 1998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41461189444640